Non-Coding RNA Search

Ss1.1-rova021_l5.5

Sequence:


               
               GGCAATGATGCAGCAGCAGCTGCAGCGCTCAGTTCTTCATCCTCCAGGCTCTGGTTCCCA
GGCAGCAGCTGTCAGCGTTCAGACTTCTCAGAATGTGCCCAGCCGGTCAGGCCTGCCCCA
CATGCACTCCCAGCTGGAGCACCGTCCCAGCCAGAGGAGCAGCTCCCCGGTGGGCCTTGC
CAAATGGTTTGGCTCAGATGTGCTACAACAACCCCTGCCCTCCATGCCCGCCAAAGTCAT
CAGTGTAGATGAATTGGAATACCGACAGTGAGCAGGGCAGGCAAGCTCGCCTAAGCCTGG
ACCTATGGTGGCACCCTGGTCAGGACTCTTCTTCCTCATCTGGGATTGGTTTTTGGGCTT
TTACTTTGCAGCACTCTGTGTGGAGCTGTTTAGGGACACCCAGGCACCTGGTGTGGTCTG
CATTATAATAGAAAGAACTTAACCAATCGAGTTGAGCCTTCATAGTCTGAATACAGGATG
CCCGATGTTGTCAATCCTGGAAACAGTCTTTTTTTTGTAAGATATGTCAATGAAGTGTGG
TGTCTTCACCAAGAGGTGACACCTTAAGGGTTCTGAGGAAATAAATGTATAGACCCTTAT
GTACAGACCTGTGTATAAACAACCTTTGTACATACATATAGGATAGCTTTTTTGAACTTA
TACAGCTGTACATAAAAGTAGCTGATATTAGTTAAGCCTGTGTCAACAGTTCTGATTTTT
TTTCACTTGTACATTTGGGACTTTCTTTTGGTTGATTAAAGTTGCATATGCAAAGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAATGATGCAGCAGCAGCTGCAGCGCTCAGTTCTTCATCCTCCAGGCTCTGGTTCCCA
GGCAGCAGCTGTCAGCGTTCAGACTTCTCAGAATGTGCCCAGCCGGTCAGGCCTGCCCCA
CATGCACTCCCAGCTGGAGCACCGTCCCAGCCAGAGGAGCAGCTCCCCGGTGGGCCTTGC
CAAATGGTTTGGCTCAGATGTGCTACAACAACCCCTGCCCTCCATGCCCGCCAAAGTCAT
CAGTGTAGATGAATTGGAATACCGACAGTGAGCAGGGCAGGCAAGCTCGCCTAAGCCTGG
ACCTATGGTGGCACCCTGGTCAGGACTCTTCTTCCTCATCTGGGATTGGTTTTTGGGCTT
TTACTTTGCAGCACTCTGTGTGGAGCTGTTTAGGGACACCCAGGCACCTGGTGTGGTCTG
CATTATAATAGAAAGAACTTAACCAATCGAGTTGAGCCTTCATAGTCTGAATACAGGATG
CCCGATGTTGTCAATCCTGGAAACAGTCTTTTTTTTGTAAGATATGTCAATGAAGTGTGG
TGTCTTCACCAAGAGGTGACACCTTAAGGGTTCTGAGGAAATAAATGTATAGACCCTTAT
GTACAGACCTGTGTATAAACAACCTTTGTACATACATATAGGATAGCTTTTTTGAACTTA
TACAGCTGTACATAAAAGTAGCTGATATTAGTTAAGCCTGTGTCAACAGTTCTGATTTTT
TTTCACTTGTACATTTGGGACTTTCTTTTGGTTGATTAAAGTTGCATATGCAAAGTGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661879|ref|XP_515252.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661879|ref|XP_515252.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               496-686, + strand, RNAz p=0.888209
               

               
               576-690, - strand, RNAz p=0.995065

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               496-686, + strand, RNAz p=0.888209
               

               
               576-690, - strand, RNAz p=0.995065

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_019843, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_019843, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               377-780, gnl|bosTau2|chr17 (43666334-43665935)
               

               
               377-780, gnl|canFam2|chr26 (27384992-27385319)
               

               
               377-780, gnl|dasNov1|scaffold_10550 (38520-38172)
               

               
               377-780, gnl|echTel1|scaffold_278303 (76863-77201)
               

               
               377-780, gnl|galGal2|chr15 (8932248-8931905)
               

               
               377-780, gnl|Hg17|chr22 (30160287-30159914)
               

               
               377-780, gnl|hg17|chr4 (125418504-125418835)
               

               
               377-780, gnl|loxAfr1|scaffold_389 (112545-112874)
               

               
               377-780, gnl|mm7|chr11 (3196593-3196267)
               

               
               377-780, gnl|Mm7|chr11 (3196190-3196583)
               

               
               377-780, gnl|oryCun1|scaffold_59890 (828-492)
               

               
               377-780, gnl|panTro1|chr3 (142267307-142267638)
               

               
               377-780, gnl|rheMac2|chr5 (116481830-116482161)
               

               
               377-780, gnl|rn3|chr17 (22166645-22166327)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               377-780, gnl|bosTau2|chr17 (43666334-43665935)
               

               
               377-780, gnl|canFam2|chr26 (27384992-27385319)
               

               
               377-780, gnl|dasNov1|scaffold_10550 (38520-38172)
               

               
               377-780, gnl|echTel1|scaffold_278303 (76863-77201)
               

               
               377-780, gnl|galGal2|chr15 (8932248-8931905)
               

               
               377-780, gnl|Hg17|chr22 (30160287-30159914)
               

               
               377-780, gnl|hg17|chr4 (125418504-125418835)
               

               
               377-780, gnl|loxAfr1|scaffold_389 (112545-112874)
               

               
               377-780, gnl|mm7|chr11 (3196593-3196267)
               

               
               377-780, gnl|Mm7|chr11 (3196190-3196583)
               

               
               377-780, gnl|oryCun1|scaffold_59890 (828-492)
               

               
               377-780, gnl|panTro1|chr3 (142267307-142267638)
               

               
               377-780, gnl|rheMac2|chr5 (116481830-116482161)
               

               
               377-780, gnl|rn3|chr17 (22166645-22166327)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cga (0.279096)
               

               
               ova (0.258264)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ova (0.258264)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               jca (0.11396)

	496-686, + strand, RNAz p=0.888209
	576-690, - strand, RNAz p=0.995065

	377-780, gnl\|bosTau2\|chr17 (43666334-43665935)
	377-780, gnl\|canFam2\|chr26 (27384992-27385319)
	377-780, gnl\|dasNov1\|scaffold_10550 (38520-38172)
	377-780, gnl\|echTel1\|scaffold_278303 (76863-77201)
	377-780, gnl\|galGal2\|chr15 (8932248-8931905)
	377-780, gnl\|Hg17\|chr22 (30160287-30159914)
	377-780, gnl\|hg17\|chr4 (125418504-125418835)
	377-780, gnl\|loxAfr1\|scaffold_389 (112545-112874)
	377-780, gnl\|mm7\|chr11 (3196593-3196267)
	377-780, gnl\|Mm7\|chr11 (3196190-3196583)
	377-780, gnl\|oryCun1\|scaffold_59890 (828-492)
	377-780, gnl\|panTro1\|chr3 (142267307-142267638)
	377-780, gnl\|rheMac2\|chr5 (116481830-116482161)
	377-780, gnl\|rn3\|chr17 (22166645-22166327)

	cga (0.279096)
	ova (0.258264)
	mas (0.210305)
	hea (0.204499)
	aor (0.195274)
	fhi (0.169578)
	ski (0.146735)
	hyp (0.142837)
	csk (0.140746)
	che (0.136314)
	jca (0.11396)