Ss1.1-rova022_c7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCCACTCTTCCTCTGACAGCCAACCTATTAGAGCATCTCCCGACTCCCGGCTCGCCCA GATAATGGAGCAGCATCAGCAAGCCCTCATGCAGCTGACCGAGGTGCAGCCCCATGAAGG AGCCTTATCGGGAGTCACTCTTCCACCCATATTATCAAGGGTGGAAAGTGAATCCCAACT CAGTTCAGAGAAAAGCCAAAGAAACCAAGTGAAAATTAGCCGCAGCAATTCTGAAGGCTA TCTGTTTCAACTGGAAAAGGGGGAAAAGCACAGGAAAAGAAGTGGCCCTAAGAGTTCCAA GCTGAAAGGTTATCCGCACAGAGACATGAAGCTTGGAGGCCTTGGACCTGACCTTGAGTC CATCAGAGACAAGATGCAGAAATTAATTCAGCAAAAGGAATATGCAAAACAAGTGAAAGA GCACAACATGAAGACGCTATCCCTCCTGTCAAAGCCACAAACAGCAAAAACGGAAAATAA ATCTGCCGTCCCTCGGCAAAAGGCTTTGGAATATGCCAAGACCATCCCCAAACCCAAACC TTCAAATCTGAGTGATCAAACCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCCACTCTTCCTCTGACAGCCAACCTATTAGAGCATCTCCCGACTCCCGGCTCGCCCA GATAATGGAGCAGCATCAGCAAGCCCTCATGCAGCTGACCGAGGTGCAGCCCCATGAAGG AGCCTTATCGGGAGTCACTCTTCCACCCATATTATCAAGGGTGGAAAGTGAATCCCAACT CAGTTCAGAGAAAAGCCAAAGAAACCAAGTGAAAATTAGCCGCAGCAATTCTGAAGGCTA TCTGTTTCAACTGGAAAAGGGGGAAAAGCACAGGAAAAGAAGTGGCCCTAAGAGTTCCAA GCTGAAAGGTTATCCGCACAGAGACATGAAGCTTGGAGGCCTTGGACCTGACCTTGAGTC CATCAGAGACAAGATGCAGAAATTAATTCAGCAAAAGGAATATGCAAAACAAGTGAAAGA GCACAACATGAAGACGCTATCCCTCCTGTCAAAGCCACAAACAGCAAAAACGGAAAATAA ATCTGCCGTCCCTCGGCAAAAGGCTTTGGAATATGCCAAGACCATCCCCAAACCCAAACC TTCAAATCTGAGTGATCAAACCTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 80-199, - strand, RNAz p=0.830819 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-199, - strand, RNAz p=0.830819 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-292, gnl|bosTau2|chr15 (23704596-23704887) | |
| 1-292, gnl|canFam2|chr5 (14401022-14400661) | |
| 1-292, gnl|dasNov1|scaffold_158272 (1586-1226) | |
| 1-292, gnl|echTel1|scaffold_322937 (82342-82681) | |
| 1-292, gnl|galGal2|chr24 (3031176-3030808) | |
| 1-292, gnl|hg17|chr11 (122322385-122322744) | |
| 1-292, gnl|Hg17|chr11 (122322419-122322710) | |
| 1-292, gnl|loxAfr1|scaffold_4284 (57900-57545) | |
| 1-292, gnl|mm7|chr9 (40841654-40841302) | |
| 1-292, gnl|Mm7|chr9 (40841626-40841335) | |
| 1-292, gnl|monDom2|scaffold_2 (113823935-113823557) | |
| 1-292, gnl|panTro1|chr9 (124365550-124365908) | |
| 1-292, gnl|rheMac2|chr14 (121305053-121305409) | |
| 1-292, gnl|rn3|chr8 (43897645-43897279) | |
| 372-503, gnl|bosTau2|chr15 (23718018-23718149) | |
| 372-503, gnl|canFam2|chr5 (14392980-14392826) | |
| 372-503, gnl|echTel1|scaffold_281882 (1985-2138) | |
| 372-503, gnl|fr1|chrUn (280207669-280207802) | |
| 372-503, gnl|galGal2|chr24 (3027661-3027526) | |
| 372-503, gnl|hg17|chr11 (122333279-122333432) | |
| 372-503, gnl|Hg17|chr11 (122333279-122333410) | |
| 372-503, gnl|loxAfr1|scaffold_4284 (46546-46393) | |
| 372-503, gnl|mm7|chr9 (40827880-40827728) | |
| 372-503, gnl|Mm7|chr9 (40827878-40827747) | |
| 372-503, gnl|monDom2|scaffold_2 (113795350-113795203) | |
| 372-503, gnl|oryCun1|scaffold_205453 (69042-69195) | |
| 372-503, gnl|panTro1|chr9 (124376525-124376678) | |
| 372-503, gnl|rheMac2|chr14 (121315927-121316080) | |
| 372-503, gnl|rn3|chr8 (43889850-43889698) | |
| 372-503, gnl|tetNig1|chr7 (1115253-1115139) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-292, gnl|bosTau2|chr15 (23704596-23704887) | |
| 1-292, gnl|canFam2|chr5 (14401022-14400661) | |
| 1-292, gnl|dasNov1|scaffold_158272 (1586-1226) | |
| 1-292, gnl|echTel1|scaffold_322937 (82342-82681) | |
| 1-292, gnl|galGal2|chr24 (3031176-3030808) | |
| 1-292, gnl|hg17|chr11 (122322385-122322744) | |
| 1-292, gnl|Hg17|chr11 (122322419-122322710) | |
| 1-292, gnl|loxAfr1|scaffold_4284 (57900-57545) | |
| 1-292, gnl|mm7|chr9 (40841654-40841302) | |
| 1-292, gnl|Mm7|chr9 (40841626-40841335) | |
| 1-292, gnl|monDom2|scaffold_2 (113823935-113823557) | |
| 1-292, gnl|panTro1|chr9 (124365550-124365908) | |
| 1-292, gnl|rheMac2|chr14 (121305053-121305409) | |
| 1-292, gnl|rn3|chr8 (43897645-43897279) | |
| 372-503, gnl|bosTau2|chr15 (23718018-23718149) | |
| 372-503, gnl|canFam2|chr5 (14392980-14392826) | |
| 372-503, gnl|echTel1|scaffold_281882 (1985-2138) | |
| 372-503, gnl|fr1|chrUn (280207669-280207802) | |
| 372-503, gnl|galGal2|chr24 (3027661-3027526) | |
| 372-503, gnl|hg17|chr11 (122333279-122333432) | |
| 372-503, gnl|Hg17|chr11 (122333279-122333410) | |
| 372-503, gnl|loxAfr1|scaffold_4284 (46546-46393) | |
| 372-503, gnl|mm7|chr9 (40827880-40827728) | |
| 372-503, gnl|Mm7|chr9 (40827878-40827747) | |
| 372-503, gnl|monDom2|scaffold_2 (113795350-113795203) | |
| 372-503, gnl|oryCun1|scaffold_205453 (69042-69195) | |
| 372-503, gnl|panTro1|chr9 (124376525-124376678) | |
| 372-503, gnl|rheMac2|chr14 (121315927-121316080) | |
| 372-503, gnl|rn3|chr8 (43889850-43889698) | |
| 372-503, gnl|tetNig1|chr7 (1115253-1115139) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.129132) |