Non-Coding RNA Search

Ss1.1-rova022_k4.5

Sequence:


               
               CTGGCCGTCCACACGCCCCTGCCCCTGTCCCTGCCAACCTCGATCCAACTCGAAGTCCAC
TCTCCTGTTCTTTACTGAAAATATCGGGGAGGTTTTCTCCTTAAGACGCCTGGTATTGAA
GTTAAAAATTTTAAAAGTCCAACCTCTCTCCCTCCTGACACCCCACTTAGCTTTCTTTTC
TTTTCTTTTCTTTTTTTTAAATAGGATTTTGGCGCTCTAAGTTGATTCCCCCCAGCGTGT
GCTCCGGAGAGAGCCCAAGGCTGGGGAAGCGAATGCGAATCTGTAAGATAGCTTAACAGT
GCACTTAACGGAAAGGGGCGTCTTGTTCTTGTTCTCTTCTTTATCATACACCAACCAAGG
TTTTTATATCAAACCAAAGGGAAATACTCTGCTAGAATATGGACTGTTGAAGTCACCAAA
CTGTGATTATTGATTCTGTACATACCATTGTTATTAAAAAAAAAAAGAACAGAGCTTTGT
ATATTTGAAATGTTATAACGCAATTGCACTCAGCGTGGTATGGTAAAAGTTTGTCCTTCT
GTAGATTCTTACTGTGTTGTAGATACGGTAGGGTTCCTAGACAAATATTTATGTACTCAA
GCCCTTTATTTAACTTATTAACTGTAGATGCTTCCGAAACCTTCAAGATAAAAGCAATGG
TACAGTACTTTTGTGTAATGTGTAATTGTTATCACTTTTCCTTGCTATCTAGTGGAGAAG
TGTCACGCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCGTCCACACGCCCCTGCCCCTGTCCCTGCCAACCTCGATCCAACTCGAAGTCCAC
TCTCCTGTTCTTTACTGAAAATATCGGGGAGGTTTTCTCCTTAAGACGCCTGGTATTGAA
GTTAAAAATTTTAAAAGTCCAACCTCTCTCCCTCCTGACACCCCACTTAGCTTTCTTTTC
TTTTCTTTTCTTTTTTTTAAATAGGATTTTGGCGCTCTAAGTTGATTCCCCCCAGCGTGT
GCTCCGGAGAGAGCCCAAGGCTGGGGAAGCGAATGCGAATCTGTAAGATAGCTTAACAGT
GCACTTAACGGAAAGGGGCGTCTTGTTCTTGTTCTCTTCTTTATCATACACCAACCAAGG
TTTTTATATCAAACCAAAGGGAAATACTCTGCTAGAATATGGACTGTTGAAGTCACCAAA
CTGTGATTATTGATTCTGTACATACCATTGTTATTAAAAAAAAAAAGAACAGAGCTTTGT
ATATTTGAAATGTTATAACGCAATTGCACTCAGCGTGGTATGGTAAAAGTTTGTCCTTCT
GTAGATTCTTACTGTGTTGTAGATACGGTAGGGTTCCTAGACAAATATTTATGTACTCAA
GCCCTTTATTTAACTTATTAACTGTAGATGCTTCCGAAACCTTCAAGATAAAAGCAATGG
TACAGTACTTTTGTGTAATGTGTAATTGTTATCACTTTTCCTTGCTATCTAGTGGAGAAG
TGTCACGCTCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-251, - strand, RNAz p=0.640924

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-251, - strand, RNAz p=0.640924

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-732, gnl|bosTau2|chrX (37279239-37279938)
               

               
               18-732, gnl|Hg17|chrX (24782243-24781495)
               

               
               18-732, gnl|Mm7|chrX (88684258-88684980)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-732, gnl|bosTau2|chrX (37279239-37279938)
               

               
               18-732, gnl|Hg17|chrX (24782243-24781495)
               

               
               18-732, gnl|Mm7|chrX (88684258-88684980)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               med (0.116252)

	18-732, gnl\|bosTau2\|chrX (37279239-37279938)
	18-732, gnl\|Hg17\|chrX (24782243-24781495)
	18-732, gnl\|Mm7\|chrX (88684258-88684980)

	ecc (0.23007)
	mas (0.210305)
	bfe (0.149858)
	ste (0.135208)
	ova (0.129132)
	med (0.116252)