Non-Coding RNA Search

Ss1.1-rova023_a1.5

Sequence:


               
               CCCTCTCCTTCCCCTTCCCCCTCCTCTTTCAATGAAAGTGAGTAGAAATTCCTCCTATTC
TCCCAATTGTTTCTTCTCACCTTTAGAGCTGTTTAGACAAGGAGAAGTAAGCAAGGAGTC
TGTTGTGTTTTATATCATGGTCACACCAATGATACCAGGACCTGCCAGGGCTAAAATTAT
ACATGTATCTCTCAACCCTGATATTGTTCAATTTCTTAAGTCCACTTCTGAGTCATATTT
GGTGTTGTCGTCTTTGGAGAGAAGAGGCAAAATTGGGGTGAGTGGGATATAAATATATTA
AGTTTTTTAAGTTTTTTTTGTTTTGTTTTAGTTAATTTTTCACCCATTTACATGAGAGAG
GTAAAATGAAGGTGAGAGTATGGGGGGTAAAAGTGTTTACAGGGCTAATGGTATTTTATT
AAAAAATGTGGAAATTATTTGACTTCATGGGGGGTCAGGCAGGAGAGGGAAGCCCAAAGC
GAGTCCTAATGTTTTAAAGGAGTTTCAGATTAGATACGAGGGCACTGTTCTGTCTGGTGT
TGTAGCCATCTCAAGAACAAATCAACAGCAACAAGAAAAATAATAATAAATTTTTAAAAT
TTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCTCCTTCCCCTTCCCCCTCCTCTTTCAATGAAAGTGAGTAGAAATTCCTCCTATTC
TCCCAATTGTTTCTTCTCACCTTTAGAGCTGTTTAGACAAGGAGAAGTAAGCAAGGAGTC
TGTTGTGTTTTATATCATGGTCACACCAATGATACCAGGACCTGCCAGGGCTAAAATTAT
ACATGTATCTCTCAACCCTGATATTGTTCAATTTCTTAAGTCCACTTCTGAGTCATATTT
GGTGTTGTCGTCTTTGGAGAGAAGAGGCAAAATTGGGGTGAGTGGGATATAAATATATTA
AGTTTTTTAAGTTTTTTTTGTTTTGTTTTAGTTAATTTTTCACCCATTTACATGAGAGAG
GTAAAATGAAGGTGAGAGTATGGGGGGTAAAAGTGTTTACAGGGCTAATGGTATTTTATT
AAAAAATGTGGAAATTATTTGACTTCATGGGGGGTCAGGCAGGAGAGGGAAGCCCAAAGC
GAGTCCTAATGTTTTAAAGGAGTTTCAGATTAGATACGAGGGCACTGTTCTGTCTGGTGT
TGTAGCCATCTCAAGAACAAATCAACAGCAACAAGAAAAATAATAATAAATTTTTAAAAT
TTAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-237, - strand, RNAz p=0.89639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-237, - strand, RNAz p=0.89639

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-604, gnl|bosTau2|chr4 (49997398-49998007)
               

               
               6-604, gnl|Hg17|chr7 (128188829-128188190)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-604, gnl|bosTau2|chr4 (49997398-49998007)
               

               
               6-604, gnl|Hg17|chr7 (128188829-128188190)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               vin (0.332557)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	6-604, gnl\|bosTau2\|chr4 (49997398-49998007)
	6-604, gnl\|Hg17\|chr7 (128188829-128188190)

	vin (0.332557)
	ova (0.258264)
	tes (0.207814)
	aor (0.195274)
	isp (0.150376)
	ssp (0.13552)
	pgl (0.118483)
	jca (0.11396)
	ldo (0.0970026)