Non-Coding RNA Search

Ss1.1-rova023_c9.5

Sequence:


               
               TTTGTTTTTCCTTTTTCTTTTTGAAATTTTTGTATTTGTTTTCTGGGTAAGGCTTATCTT
CTTTTTGGTTACTATTCAGTGGCACAGAAAAGTCAAAAGTTTCCTATTTTTCGAAATTCA
TTATTTAGCTCCTAAATGAGGTTAACTTGTGAATCACTAATCTTAATACTCTTGAGGATG
TGTTACCCTTCTGCATATAAAGTTAATTTGTGAGAGTTTTTACTGCTAAATCATTTATCT
CTGCACCATTGGGAAGTTTTAGAAACTTCTGCCCATGATCTGATGCTTTATTTAATTAAG
GAGCTGCTGTTGCATTCAGGAACCTTAAGTATTTTGTATAAGCTTTTTTTCTTTTTCCCT
CCTTTCTTTGCTGTTCATGTTTGTTCTTCAAACCAGTGTTTTGGAAGTATGCATGCAAGC
CTATAAACGAAGACCGCAACTCTTCATGTGTGTAGCATGTGTATTATATTGTCTAGCTAC
ATCTGCAAAAAACTTCTTTTTCAGAGGTTTGGACTAACATTTCACATGCACCTTTCAAAA
CAAAAATGCAATGCTTCAGATAATAAACAGCCCCTTTACCAACCAAGAAGAGCAATGTGG
GGTACATTTGCCCCAGTAAGAGCTAGTGTTTGCTTTGAAAGTGAATTTAATTATATGTTA
TACAATATTATGACTACAGCTGTGCAAGAAATAAAGCAAAAGAAACTTCTCTTTTCGTGA
AAATATTTTTCATCAGTCATTGCTCTCAAATATAAATGAAAATACAAAATTTCTGAATAC
CATATTGTCGGAGACACTACCTAATTTTTAAATGTGCAGTAGTCCTCGAAAAGAAGCTAA
AATTTATCCTTCCATTTGGTATTTCAAGAACATCGAAAATATTCCAAGCAAAAATGATTT
GTATTTTTAAAGGGACTCTTAGCACAAGTAAAAATCTGACAAGTTCATGAGCAGGATGTC
TCGGTTATGTGCAGGGAGTCTTCTCACATGCACCGGTTTTCCAACTTGGAATGACAAGAT
GACACTATTCTCTTTGATCGAAGAAAAATCATAATGTTGATTTGATCAAGGTGTAACCAC
TATCAATATTTAGGAGACATTTAAAAAGACCATAGACTGGCATTGGAAGGAACAACACCA
TGGTAGACTTTTTGTAAATTTATTTTGTATTTAATTAAATGCAGTATAAAGGCTGGTGAA
GTGTATTATAATTGTGTAAACAAATCCTGTTAATAGAGAGCTGTACAGATTCATTTTGTA
CCATATCTTGAAACTTGTGAAATAAAGATTCCACCTCTGGTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTTTTCCTTTTTCTTTTTGAAATTTTTGTATTTGTTTTCTGGGTAAGGCTTATCTT
CTTTTTGGTTACTATTCAGTGGCACAGAAAAGTCAAAAGTTTCCTATTTTTCGAAATTCA
TTATTTAGCTCCTAAATGAGGTTAACTTGTGAATCACTAATCTTAATACTCTTGAGGATG
TGTTACCCTTCTGCATATAAAGTTAATTTGTGAGAGTTTTTACTGCTAAATCATTTATCT
CTGCACCATTGGGAAGTTTTAGAAACTTCTGCCCATGATCTGATGCTTTATTTAATTAAG
GAGCTGCTGTTGCATTCAGGAACCTTAAGTATTTTGTATAAGCTTTTTTTCTTTTTCCCT
CCTTTCTTTGCTGTTCATGTTTGTTCTTCAAACCAGTGTTTTGGAAGTATGCATGCAAGC
CTATAAACGAAGACCGCAACTCTTCATGTGTGTAGCATGTGTATTATATTGTCTAGCTAC
ATCTGCAAAAAACTTCTTTTTCAGAGGTTTGGACTAACATTTCACATGCACCTTTCAAAA
CAAAAATGCAATGCTTCAGATAATAAACAGCCCCTTTACCAACCAAGAAGAGCAATGTGG
GGTACATTTGCCCCAGTAAGAGCTAGTGTTTGCTTTGAAAGTGAATTTAATTATATGTTA
TACAATATTATGACTACAGCTGTGCAAGAAATAAAGCAAAAGAAACTTCTCTTTTCGTGA
AAATATTTTTCATCAGTCATTGCTCTCAAATATAAATGAAAATACAAAATTTCTGAATAC
CATATTGTCGGAGACACTACCTAATTTTTAAATGTGCAGTAGTCCTCGAAAAGAAGCTAA
AATTTATCCTTCCATTTGGTATTTCAAGAACATCGAAAATATTCCAAGCAAAAATGATTT
GTATTTTTAAAGGGACTCTTAGCACAAGTAAAAATCTGACAAGTTCATGAGCAGGATGTC
TCGGTTATGTGCAGGGAGTCTTCTCACATGCACCGGTTTTCCAACTTGGAATGACAAGAT
GACACTATTCTCTTTGATCGAAGAAAAATCATAATGTTGATTTGATCAAGGTGTAACCAC
TATCAATATTTAGGAGACATTTAAAAAGACCATAGACTGGCATTGGAAGGAACAACACCA
TGGTAGACTTTTTGTAAATTTATTTTGTATTTAATTAAATGCAGTATAAAGGCTGGTGAA
GTGTATTATAATTGTGTAAACAAATCCTGTTAATAGAGAGCTGTACAGATTCATTTTGTA
CCATATCTTGAAACTTGTGAAATAAAGATTCCACCTCTGGTTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               435-554, + strand, RNAz p=0.509815

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               435-554, + strand, RNAz p=0.509815

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               441-527, + strand, RNAmicro p=0.974826

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               441-527, + strand, RNAmicro p=0.974826

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-901, gnl|bosTau2|chr10 (64592756-64591890)
               

               
               1-901, gnl|Hg17|chr14 (81010350-81009417)
               


               
               919-1303, gnl|bosTau2|chr10 (64591893-64591513)
               

               
               919-1303, gnl|Hg17|chr14 (81009436-81009017)
               

               
               919-1303, gnl|Mm7|chr12 (89289600-89289200)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-901, gnl|bosTau2|chr10 (64592756-64591890)
               

               
               1-901, gnl|Hg17|chr14 (81010350-81009417)
               


               
               919-1303, gnl|bosTau2|chr10 (64591893-64591513)
               

               
               919-1303, gnl|Hg17|chr14 (81009436-81009017)
               

               
               919-1303, gnl|Mm7|chr12 (89289600-89289200)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               ski (0.733676)
               

               
               gul (0.532765)
               

               
               thg (0.380373)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.733676)
               

               
               gul (0.532765)
               

               
               thg (0.380373)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-901, gnl\|bosTau2\|chr10 (64592756-64591890)
	1-901, gnl\|Hg17\|chr14 (81010350-81009417)

	919-1303, gnl\|bosTau2\|chr10 (64591893-64591513)
	919-1303, gnl\|Hg17\|chr14 (81009436-81009017)
	919-1303, gnl\|Mm7\|chr12 (89289600-89289200)

	ski (0.733676)
	gul (0.532765)
	thg (0.380373)
	eye (0.341006)
	vin (0.332557)
	fco (0.314416)
	ova (0.258264)
	tra (0.246184)
	col (0.195008)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	spc (0.113366)
	jej (0.0989218)