Non-Coding RNA Search

Ss1.1-rova023_k20.5

Sequence:


               
               CATTGTAACTATTAACCTTTTTTGTCTTATTGAAAAAAAATGTTGAGAAGCATTTTTAAC
CTGTTTTGTTAATGCTCTATGTTTGTATTTGGAATATTTGAATGATGACAGATGGTGAAG
TAACGTGCATACTTTATTGTGGGCCATGAATGCAGCGGTTCTTACTTTTCCTGGACTTAA
AGAAAAAAAAAAAGGTTTAAGTTTGTTGTGGCCAATGGTGAAACCTACAAGATTTCCTTA
TAAGCTCAACTAGAGGCATTACTTGCTTTGAATTGCCAAATGATGTCCTCTGACTATAGA
TTTTTATGATCATTTTTGTCATTATATAAATTTCATTGACTTTATAATTGGTGCTATTCA
AAGAAAAAAATGTGCATTTATTCATATATAGGTATCAGGCCTGTCCCCACTGGAAAAAAA
AAGCCAAACAAAACTGAACCACAGAAAAAAAGCTGATGTTCACCAAAAACTAAATGTGTT
CACTTAGATGATTTGAAATTTACATAGAAAAGGTGTGCAGTACTAAGGGAACAATCCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGTAACTATTAACCTTTTTTGTCTTATTGAAAAAAAATGTTGAGAAGCATTTTTAAC
CTGTTTTGTTAATGCTCTATGTTTGTATTTGGAATATTTGAATGATGACAGATGGTGAAG
TAACGTGCATACTTTATTGTGGGCCATGAATGCAGCGGTTCTTACTTTTCCTGGACTTAA
AGAAAAAAAAAAAGGTTTAAGTTTGTTGTGGCCAATGGTGAAACCTACAAGATTTCCTTA
TAAGCTCAACTAGAGGCATTACTTGCTTTGAATTGCCAAATGATGTCCTCTGACTATAGA
TTTTTATGATCATTTTTGTCATTATATAAATTTCATTGACTTTATAATTGGTGCTATTCA
AAGAAAAAAATGTGCATTTATTCATATATAGGTATCAGGCCTGTCCCCACTGGAAAAAAA
AAGCCAAACAAAACTGAACCACAGAAAAAAAGCTGATGTTCACCAAAAACTAAATGTGTT
CACTTAGATGATTTGAAATTTACATAGAAAAGGTGTGCAGTACTAAGGGAACAATCCATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-315, - strand, RNAz p=0.606554

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-315, - strand, RNAz p=0.606554

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr1 (13234632-13235193)
               

               
               1-540, gnl|Hg17|chr3 (78729752-78729206)
               

               
               1-540, gnl|Mm7|chr16 (73042478-73043067)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr1 (13234632-13235193)
               

               
               1-540, gnl|Hg17|chr3 (78729752-78729206)
               

               
               1-540, gnl|Mm7|chr16 (73042478-73043067)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	1-540, gnl\|bosTau2\|chr1 (13234632-13235193)
	1-540, gnl\|Hg17\|chr3 (78729752-78729206)
	1-540, gnl\|Mm7\|chr16 (73042478-73043067)