Non-Coding RNA Search

Ss1.1-rova023_m7.5

Sequence:


               
               AGAGCGGAAACGTGGATGCGGATACCGCTGCTCAACCATGGGTGCTCCGGGCGGAAAAAT
CAACCGGCCGCGAACGGAGCTGAAGAAGAAGCTGTTCAAGCGACGGCGTGTGCTGAGCAG
GGAGCGGCGACTGAGGCACCGTGTGGTCGGAGCCGTGATAGACGAAGGGCTGATCACAAG
GCACCACCTCAAGAAGCGGGCGTCCAGTGCACGTGCCAACATTACTCTATCCGGGAAGAA
GCGCAGAAAACTCCTCCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCAATGGAAGT
GGAAGCCCCCTACAAGCCAGCCAGGACTAGTAATTCACAGCCAAAATTGAAAAAGAAGCC
AAAGCCCCCCCAGGATGTAGACATGGAGGACCTCGAAAATCAGAGCTAAATTTCACACCC
CTCGCACCAGAAGATTCTCAGCTGGAGCCAGGAGGAGACTCGATGGTTGTTTCAAAGGAC
TTGGGAGAAAGCGTTGCTCCTTTTCACTCTCCCCAGATTCCTCTTCCCTGATGGCTTAGT
GACCTGACCTGGAGGGATGTATGGAGAGGGAAAGAGTGGAAAAGAAAGATTGGAGAGGGG
GGCTTCCTGATGAGTCCACTCCATTTGTAATAAAGCCCTAGAGTTCTCACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCGGAAACGTGGATGCGGATACCGCTGCTCAACCATGGGTGCTCCGGGCGGAAAAAT
CAACCGGCCGCGAACGGAGCTGAAGAAGAAGCTGTTCAAGCGACGGCGTGTGCTGAGCAG
GGAGCGGCGACTGAGGCACCGTGTGGTCGGAGCCGTGATAGACGAAGGGCTGATCACAAG
GCACCACCTCAAGAAGCGGGCGTCCAGTGCACGTGCCAACATTACTCTATCCGGGAAGAA
GCGCAGAAAACTCCTCCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCAATGGAAGT
GGAAGCCCCCTACAAGCCAGCCAGGACTAGTAATTCACAGCCAAAATTGAAAAAGAAGCC
AAAGCCCCCCCAGGATGTAGACATGGAGGACCTCGAAAATCAGAGCTAAATTTCACACCC
CTCGCACCAGAAGATTCTCAGCTGGAGCCAGGAGGAGACTCGATGGTTGTTTCAAAGGAC
TTGGGAGAAAGCGTTGCTCCTTTTCACTCTCCCCAGATTCCTCTTCCCTGATGGCTTAGT
GACCTGACCTGGAGGGATGTATGGAGAGGGAAAGAGTGGAAAAGAAAGATTGGAGAGGGG
GGCTTCCTGATGAGTCCACTCCATTTGTAATAAAGCCCTAGAGTTCTCACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CSS6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CSS6_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               482-599, - strand, RNAz p=0.749147

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-599, - strand, RNAz p=0.749147

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               12-303, gnl|bosTau2|chr28 (536439-536166)
               

               
               12-303, gnl|Hg17|chr11 (62189223-62187181)
               

               
               12-303, gnl|Mm7|chr19 (11638749-11639019)
               


               
               324-650, gnl|bosTau2|chr28 (536168-535852)
               

               
               324-650, gnl|Hg17|chr11 (62187183-62186868)
               

               
               324-650, gnl|Mm7|chr19 (11639017-11639314)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-303, gnl|bosTau2|chr28 (536439-536166)
               

               
               12-303, gnl|Hg17|chr11 (62189223-62187181)
               

               
               12-303, gnl|Mm7|chr19 (11638749-11639019)
               


               
               324-650, gnl|bosTau2|chr28 (536168-535852)
               

               
               324-650, gnl|Hg17|chr11 (62187183-62186868)
               

               
               324-650, gnl|Mm7|chr19 (11639017-11639314)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ill (0.351185)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	12-303, gnl\|bosTau2\|chr28 (536439-536166)
	12-303, gnl\|Hg17\|chr11 (62189223-62187181)
	12-303, gnl\|Mm7\|chr19 (11638749-11639019)

	324-650, gnl\|bosTau2\|chr28 (536168-535852)
	324-650, gnl\|Hg17\|chr11 (62187183-62186868)
	324-650, gnl\|Mm7\|chr19 (11639017-11639314)

	ill (0.351185)
	sto (0.179824)
	ton (0.1755)
	cje (0.165235)
	cki (0.165235)
	cli (0.152812)
	hyp (0.142837)
	lnt (0.142308)
	pla (0.133672)
	ute (0.132784)
	ova (0.129132)
	thg (0.126791)
	cly (0.120642)
	eru (0.120048)
	nbm (0.0993246)
	jej (0.0989218)