Non-Coding RNA Search

Ss1.1-rova023_o3.5.5

Sequence:


               
               GCATTGAGGCAGCGAGCGCAGAGACGGCTGAGAGGCAGGAAACGCTTCTTGAGGAGACCG
CAGATAAGTTTTTCTGTTAAGATAGGGATTACTCTTATTCTCTAGGAATTATAAATTAGC
GAAAATACTGAGCTGTAGTTTTGAGTTAAATTCGTGAGAGTAGATCTGATAATTAATAGG
AAGGTCTTATTTTAGGGGAAAATGGAGACGTCCTTAAAAAATAGTATGAGAAAGGAAGAA
AGAAGAAAAAAGATAATATTAGAACATGACGGAGGTTAAGAGCTGAAGCTTCTTCATGGA
GTGAGAAAGCTAATTTTAAAAGGAGTTGCCGAGACAGGACTGCAAAGTATGGAATTTTAA
AGTCTTAAATTGAAGGGCAGCTTTTTAGATTATTGTTCAAACGTAATGCTATAAATAGAA
CCTAAACAATACTTTTAAAGTCCAGTCGTAGATGGATTAAAATGTTTTAAAAGCCATCTT
TAAAGGTCAGTTGAAGGTGATTTAAGAAATGCCTTCAAATTCACGGCGCGATCAAAACTG
CGTCATTTGAAGCCTTAAGGCTTTCTTTGGAAGTTGATGGAAGTATTAGTGGAGAAAGAA
GATTAGAAATTTGAAGTGGAAAACTCGGAAGACAAGTACAGGAAGGTGAAGAAAAGATTA
GTGAAGATAGGAAAACTAGAAGATAAAAAATACGGCTTTTAGAAGACAGAAAAAAACTAA
GCCCAGAAGGTAGGAGGCAGAAGACATCTAGAAAGAGAAGGTTGAAAAGATGTTCGAGTG
TTTGAGGTAGAAAATGAGAAACAAGCTGTTGGAGACAAGCATACAAGATAGAGGTCCAAG
TAATTGGAAGATAGAAAAGTCCGAAGCCAAAAAATTGGATAAGTACAAGACGCAAAACTA
AGAAAAATAATTTTTAATAGTTAAATTTATTTAAAAAGCCCATCAACTTTAATTTGTGGT
GGTGCAGAAGTTAGATCTGAGAAGAGGGTTTTAAACTACAGTAGACCAAGACCAACTTAG
AAGAATATCTCGAAGCTGTAGAGGGAAGTAAATTTAAAATCACAGCAAAAAGCTACTAAA
AAGACTGATGTAAAAATTAAGGTAGACGGAAGAGTTAAAAATTTGAAAGGCCTTAAATCC
ATACAGTAGTTTAGTTTCTTCTGGAAAACTTAAAGGACGATAAATTCAACAGCGAGGATA
ACCAAGTTAACATTTTTTGCATTGGACTTTGAGCTAAGATGAATTTCTAAACCCTGAGGA
CTAGGCGCTAATTAACAGCTGACCAGGTGCTACACAGAAGTGGATTCAGAGAACCTAGGA
AGACAGCAGCAGACAGGATTCCAGGAGCCAGTTTTTGGTGAAACTAGGACTGAGGAGCGA
GCGGCAGTTCGTGAAGATAGGAAGGAGGAGCCCGGGAGCCAGTGCGATTTGGTGAAGGAA
GCTAGGAAGAAGGAAGGAGCCCTAACGGTTGGAGGTGAAGCTAGGAGAGGATTCCAGGAA
GGAGGAAGCCAGTGCGATGTGGTGATGAAGCTAGCGTGCGGCTTGGCGGCGTGGCTTGGC
AACCCCGCGGAGGAGGCGAGCAGGCGGTGTGGAGGCTAGATAGAGCGTCCTAGAGCGGCA
GCCCAGTGTGCAAGGCCGGCAGGGAGAGCCAGTGGTGTGGTAAAAATCCGTGAGGTCGGC
AGTATCGTGGGTTCTGCTTTGTTTCTTCACCTTTTTTTGGTAACAGTACGGTAATCTTTG
TTGTATTTCCTAATGGTGATGGGGGAGCTGTGTACTTAAGCATAAAGGGTTTTATGGGGA
TGTAGGCCGATTTTCGGGTGTTGTAGGTTTCTCTTTTTCAGGCGTATTTTCTCATCTTGT
CTGAAGCTTTTGAGGGCAGACTACCAAGGCCCGGAGGAATAGTAGATGGCAAGTGTTTTC
GTTTTTAACCAATATGAGGGAAAACAAATGAATTTGATAGAACAACCTTGAGACAGTTTC
AGCCAGCTTTGTAAGCAGGTTTTATATTTAGCTTGGTAATGAAGCATTTCCGTTTTGTGA
GTAGATGACTTAATTTTCTTTCTCATTCTCTATTCTAAGTTACCTATATATATATAGTTG
GGTGTGTAATTCGGGGGGGTAAAGGTTTTGGGGGGGCAAAATATGTTTTGAGTTCTTTTC
CCTTTAGGTCTGTCTAGAATTCCAAAGGCAAATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTGAGGCAGCGAGCGCAGAGACGGCTGAGAGGCAGGAAACGCTTCTTGAGGAGACCG
CAGATAAGTTTTTCTGTTAAGATAGGGATTACTCTTATTCTCTAGGAATTATAAATTAGC
GAAAATACTGAGCTGTAGTTTTGAGTTAAATTCGTGAGAGTAGATCTGATAATTAATAGG
AAGGTCTTATTTTAGGGGAAAATGGAGACGTCCTTAAAAAATAGTATGAGAAAGGAAGAA
AGAAGAAAAAAGATAATATTAGAACATGACGGAGGTTAAGAGCTGAAGCTTCTTCATGGA
GTGAGAAAGCTAATTTTAAAAGGAGTTGCCGAGACAGGACTGCAAAGTATGGAATTTTAA
AGTCTTAAATTGAAGGGCAGCTTTTTAGATTATTGTTCAAACGTAATGCTATAAATAGAA
CCTAAACAATACTTTTAAAGTCCAGTCGTAGATGGATTAAAATGTTTTAAAAGCCATCTT
TAAAGGTCAGTTGAAGGTGATTTAAGAAATGCCTTCAAATTCACGGCGCGATCAAAACTG
CGTCATTTGAAGCCTTAAGGCTTTCTTTGGAAGTTGATGGAAGTATTAGTGGAGAAAGAA
GATTAGAAATTTGAAGTGGAAAACTCGGAAGACAAGTACAGGAAGGTGAAGAAAAGATTA
GTGAAGATAGGAAAACTAGAAGATAAAAAATACGGCTTTTAGAAGACAGAAAAAAACTAA
GCCCAGAAGGTAGGAGGCAGAAGACATCTAGAAAGAGAAGGTTGAAAAGATGTTCGAGTG
TTTGAGGTAGAAAATGAGAAACAAGCTGTTGGAGACAAGCATACAAGATAGAGGTCCAAG
TAATTGGAAGATAGAAAAGTCCGAAGCCAAAAAATTGGATAAGTACAAGACGCAAAACTA
AGAAAAATAATTTTTAATAGTTAAATTTATTTAAAAAGCCCATCAACTTTAATTTGTGGT
GGTGCAGAAGTTAGATCTGAGAAGAGGGTTTTAAACTACAGTAGACCAAGACCAACTTAG
AAGAATATCTCGAAGCTGTAGAGGGAAGTAAATTTAAAATCACAGCAAAAAGCTACTAAA
AAGACTGATGTAAAAATTAAGGTAGACGGAAGAGTTAAAAATTTGAAAGGCCTTAAATCC
ATACAGTAGTTTAGTTTCTTCTGGAAAACTTAAAGGACGATAAATTCAACAGCGAGGATA
ACCAAGTTAACATTTTTTGCATTGGACTTTGAGCTAAGATGAATTTCTAAACCCTGAGGA
CTAGGCGCTAATTAACAGCTGACCAGGTGCTACACAGAAGTGGATTCAGAGAACCTAGGA
AGACAGCAGCAGACAGGATTCCAGGAGCCAGTTTTTGGTGAAACTAGGACTGAGGAGCGA
GCGGCAGTTCGTGAAGATAGGAAGGAGGAGCCCGGGAGCCAGTGCGATTTGGTGAAGGAA
GCTAGGAAGAAGGAAGGAGCCCTAACGGTTGGAGGTGAAGCTAGGAGAGGATTCCAGGAA
GGAGGAAGCCAGTGCGATGTGGTGATGAAGCTAGCGTGCGGCTTGGCGGCGTGGCTTGGC
AACCCCGCGGAGGAGGCGAGCAGGCGGTGTGGAGGCTAGATAGAGCGTCCTAGAGCGGCA
GCCCAGTGTGCAAGGCCGGCAGGGAGAGCCAGTGGTGTGGTAAAAATCCGTGAGGTCGGC
AGTATCGTGGGTTCTGCTTTGTTTCTTCACCTTTTTTTGGTAACAGTACGGTAATCTTTG
TTGTATTTCCTAATGGTGATGGGGGAGCTGTGTACTTAAGCATAAAGGGTTTTATGGGGA
TGTAGGCCGATTTTCGGGTGTTGTAGGTTTCTCTTTTTCAGGCGTATTTTCTCATCTTGT
CTGAAGCTTTTGAGGGCAGACTACCAAGGCCCGGAGGAATAGTAGATGGCAAGTGTTTTC
GTTTTTAACCAATATGAGGGAAAACAAATGAATTTGATAGAACAACCTTGAGACAGTTTC
AGCCAGCTTTGTAAGCAGGTTTTATATTTAGCTTGGTAATGAAGCATTTCCGTTTTGTGA
GTAGATGACTTAATTTTCTTTCTCATTCTCTATTCTAAGTTACCTATATATATATAGTTG
GGTGTGTAATTCGGGGGGGTAAAGGTTTTGGGGGGGCAAAATATGTTTTGAGTTCTTTTC
CCTTTAGGTCTGTCTAGAATTCCAAAGGCAAATGAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               481-576, - strand, RNAz p=0.583783
               

               
               1443-1559, - strand, RNAz p=0.555746

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               481-576, - strand, RNAz p=0.583783
               

               
               1443-1559, - strand, RNAz p=0.555746

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               189-2129, gnl|bosTau2|chr29 (38434738-38432803)
               

               
               189-2129, gnl|Hg17|chr11 (65023259-65025267)
               

               
               189-2129, gnl|Mm7|chr19 (5697284-5695473)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-2129, gnl|bosTau2|chr29 (38434738-38432803)
               

               
               189-2129, gnl|Hg17|chr11 (65023259-65025267)
               

               
               189-2129, gnl|Mm7|chr19 (5697284-5695473)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               vin (0.997672)
               

               
               cbl (0.688784)
               

               
               bla (0.497389)
               

               
               ova (0.387397)
               

               
               pgl (0.35545)
               

               
               cst (0.280073)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               cbl (0.688784)
               

               
               bla (0.497389)
               

               
               ova (0.387397)
               

               
               pgl (0.35545)
               

               
               cst (0.280073)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	481-576, - strand, RNAz p=0.583783
	1443-1559, - strand, RNAz p=0.555746

	189-2129, gnl\|bosTau2\|chr29 (38434738-38432803)
	189-2129, gnl\|Hg17\|chr11 (65023259-65025267)
	189-2129, gnl\|Mm7\|chr19 (5697284-5695473)

	vin (0.997672)
	cbl (0.688784)
	bla (0.497389)
	ova (0.387397)
	pgl (0.35545)
	cst (0.280073)
	pan (0.23596)
	med (0.232504)
	cty (0.20816)
	cmu (0.186393)
	fbs (0.175346)
	sin (0.174948)
	mcp (0.170648)
	ski (0.146735)
	nmm (0.132802)
	thg (0.126791)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)