Non-Coding RNA Search

Ss1.1-rova025_o17.5

Sequence:


               
               CACCAACACCATGATCCCCACCAAAATCAACGATGGCCAGTGGCACAAGATTAAGATTAT
GCGAATTAAGCAAGAAGGAATTCTTGATGTAGACGGTGCCTCCAACAGAACCATCAGTCC
CAAGAAAGCCGATATTCTGGATGTGGTGGGAATGCTTTATGTTGGCGGTCTACCCATTAA
CTACACCACCCGAAGAATTGGTCCAGTGACCTATAGCATTGATGGCTGCATCAGGAATTT
TCAGATGACGGAAGCCCCTGCTGATCTTGAACGGCCAACGTCCAGCTACCATGTTGGAAC
GTGTTTTGCACATGCTCAGAAAGGGACGTATTTTGATGGAACAGGTTTTGCCAAAGCAGT
TGATGGGTTCAAAGTGGGATTGGACCTGCTTGTAGAATTTGAATTCCGCACAACGAGAAC
CACTGGAGTTCTTCTGGGAATCAGCAGTCAAAAAATGGATGGAATGGGTATTGAAATGAT
TGATGAAAAGCTCATGTTTCATGTGGACAATGGCGCCGGTTGGTTCACCGCTGTCTACGA
CACTGGGATCCCAGGGCATTTGTGTGACGGGAAGTGGCATAAAGTCGTGGCCAAAAAGAT
CAAACACCGCGTTGAGCTGACAGTGGATGGGAACCAGGTGGAAGCCCAGAGCCCAAACCC
AGCATCGACATCAGCAGATACAAATGACCCCGTGTTTGTTGGAGGGTTCCCAGATGGCCT
CAACCAGTTTGGCCTGACAACCAACATTCGTTTCCGAGGTTGTATTCGATTCCTGAGGCT
CACCAAAGGCACAGGCAAGCCACTGGAGGTGAATTTTGCCAAGGCCCTGGAACTAAGGGG
CGTTCAACCAGTATCATGCCCAGCCAACTAATAAAAATAAGTTCAGCTCTAAGAAGGTCC
TTTAAAACAAACATATCAAGTAAACAAAATATATTTTACCTATGTATGTTATGAAAGTTA
ATTTGTGCATGTATATTGAATTCTTTCCATATTTTGATGGTGCTAATTCAGATCCCAGAC
TGAATTTTAATTCACATTCTTTCTCAAGTCCATGAATATTAAACCTATTATTGCATTCTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAACACCATGATCCCCACCAAAATCAACGATGGCCAGTGGCACAAGATTAAGATTAT
GCGAATTAAGCAAGAAGGAATTCTTGATGTAGACGGTGCCTCCAACAGAACCATCAGTCC
CAAGAAAGCCGATATTCTGGATGTGGTGGGAATGCTTTATGTTGGCGGTCTACCCATTAA
CTACACCACCCGAAGAATTGGTCCAGTGACCTATAGCATTGATGGCTGCATCAGGAATTT
TCAGATGACGGAAGCCCCTGCTGATCTTGAACGGCCAACGTCCAGCTACCATGTTGGAAC
GTGTTTTGCACATGCTCAGAAAGGGACGTATTTTGATGGAACAGGTTTTGCCAAAGCAGT
TGATGGGTTCAAAGTGGGATTGGACCTGCTTGTAGAATTTGAATTCCGCACAACGAGAAC
CACTGGAGTTCTTCTGGGAATCAGCAGTCAAAAAATGGATGGAATGGGTATTGAAATGAT
TGATGAAAAGCTCATGTTTCATGTGGACAATGGCGCCGGTTGGTTCACCGCTGTCTACGA
CACTGGGATCCCAGGGCATTTGTGTGACGGGAAGTGGCATAAAGTCGTGGCCAAAAAGAT
CAAACACCGCGTTGAGCTGACAGTGGATGGGAACCAGGTGGAAGCCCAGAGCCCAAACCC
AGCATCGACATCAGCAGATACAAATGACCCCGTGTTTGTTGGAGGGTTCCCAGATGGCCT
CAACCAGTTTGGCCTGACAACCAACATTCGTTTCCGAGGTTGTATTCGATTCCTGAGGCT
CACCAAAGGCACAGGCAAGCCACTGGAGGTGAATTTTGCCAAGGCCCTGGAACTAAGGGG
CGTTCAACCAGTATCATGCCCAGCCAACTAATAAAAATAAGTTCAGCTCTAAGAAGGTCC
TTTAAAACAAACATATCAAGTAAACAAAATATATTTTACCTATGTATGTTATGAAAGTTA
ATTTGTGCATGTATATTGAATTCTTTCCATATTTTGATGGTGCTAATTCAGATCCCAGAC
TGAATTTTAATTCACATTCTTTCTCAAGTCCATGAATATTAAACCTATTATTGCATTCTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13096214|pdb|1DYK|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13096214|pdb|1DYK|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               711-829, - strand, RNAz p=0.526395

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               711-829, - strand, RNAz p=0.526395

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               206-363, gnl|bosTau2|chr9 (38018738-38018895)
               

               
               206-363, gnl|Hg17|chr6 (129870327-129870484)
               

               
               206-363, gnl|Mm7|chr10 (26741655-26741498)
               


               
               711-1085, gnl|bosTau2|chr9 (38026142-38026518)
               

               
               711-1085, gnl|Hg17|chr6 (129879025-129879407)
               

               
               711-1085, gnl|Mm7|chr10 (26733841-26733468)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-363, gnl|bosTau2|chr9 (38018738-38018895)
               

               
               206-363, gnl|Hg17|chr6 (129870327-129870484)
               

               
               206-363, gnl|Mm7|chr10 (26741655-26741498)
               


               
               711-1085, gnl|bosTau2|chr9 (38026142-38026518)
               

               
               711-1085, gnl|Hg17|chr6 (129879025-129879407)
               

               
               711-1085, gnl|Mm7|chr10 (26733841-26733468)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	206-363, gnl\|bosTau2\|chr9 (38018738-38018895)
	206-363, gnl\|Hg17\|chr6 (129870327-129870484)
	206-363, gnl\|Mm7\|chr10 (26741655-26741498)

	711-1085, gnl\|bosTau2\|chr9 (38026142-38026518)
	711-1085, gnl\|Hg17\|chr6 (129879025-129879407)
	711-1085, gnl\|Mm7\|chr10 (26733841-26733468)

	ova (0.258264)
	pgl (0.236967)
	aor (0.195274)
	nep (0.183925)
	sag (0.182715)
	gul (0.177588)
	pty (0.142714)
	hlv (0.139256)
	nmm (0.132802)
	ese (0.126502)
	eep (0.122564)
	jca (0.11396)
	eje (0.0988338)