Non-Coding RNA Search

Ss1.1-rova026_a15.5

Sequence:


               
               GAATGTTAGACGAAGATGAGGAGGATTTGCAGCGGGCTCTGGCCCTAAGTCGCCAGGAAA
TCGACATGGAAGATGAAGAGGCAGATCTCCGCAGGGCTATTCAGCTCAGTATGCAAGGTA
CTTCCAGAAAACATATCTCAAGATATTCCACAGACATCAGGTACACATCTTACTTCAGAA
GAGCTGCGGAAGAGAAGAGAAGCCGTACTTTGAAAAGCAGCAGCAGCAGCAGCAAGATCC
ACCAGGACCACTTACACATCCATGTGAAAAGCCAACCACAAGTTCAGAAGCACTTAGCAG
TGAACTTGGTGATGCCATGAGTGAAGAAGATATGCTTCAGGCAGCTGTGACCATGTCTTT
AAAAACTGTTAGAAATAATTTCAAAACAGAAGGGAAAAAATAATACCTTTCACAAATCAT
TTAGATACTCATACTTTCCAACATTATCCTGTGTGATTACAGCATAGGGTCCATTTTGAT
AATGTGTCAAAGAACAATTTTCAACAGAGGAAATAAGATTTAGGTGGTTTGCAAACAATA
AGATGAGATGATGGAAAAATGCATTCGTTGTCAGGACTAAGTAATGATCGTCCAAACACT
AGCCAAAGAGGCGTTCAGCAGCTAAACTTAAAATAGTTTTCTAAATGTTCCTTTTTCTTT
TTTGAGTGTGCAATATCTAACATGTCTAAAATTAGGGCATTTTTCTTGGATCTTTTTGCA
GACCAACTAATTATAACTAGCTCTTGCCACAGAACTTTTCCCATGCATTTTGTTTTCTTT
TCCTCCCTTCTGCACAGGGAATTTGGCTCCCTTGCATCATCTTAGAGTTGCTCTTATTTC
TCATTAACCACATTAACCTCTTTAGGATGGTGTCTCTTTACTGTATTGATAATAGTAATG
GTTCCAGAAGGATAAGCCATTCTCCCTTTGACCATGTATCACGCACTTGGGTGTTTTTTT
CATGTTATTTCCTCTGATCACAATTTCTCTGCTACTGGGTTTTCATTGCTTTCTACAACT
CTTGAAAGATGGCAGTCTTCAAGGTTTTGCTTTTTAAGCCCTCTATGATGGGATCCTTAC
TTCATGTTTTTGGTGCATTCCTACACTCTGAAATCAGCCCTGCACAAGTATTTGAGAATA
AATGAGAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGTTAGACGAAGATGAGGAGGATTTGCAGCGGGCTCTGGCCCTAAGTCGCCAGGAAA
TCGACATGGAAGATGAAGAGGCAGATCTCCGCAGGGCTATTCAGCTCAGTATGCAAGGTA
CTTCCAGAAAACATATCTCAAGATATTCCACAGACATCAGGTACACATCTTACTTCAGAA
GAGCTGCGGAAGAGAAGAGAAGCCGTACTTTGAAAAGCAGCAGCAGCAGCAGCAAGATCC
ACCAGGACCACTTACACATCCATGTGAAAAGCCAACCACAAGTTCAGAAGCACTTAGCAG
TGAACTTGGTGATGCCATGAGTGAAGAAGATATGCTTCAGGCAGCTGTGACCATGTCTTT
AAAAACTGTTAGAAATAATTTCAAAACAGAAGGGAAAAAATAATACCTTTCACAAATCAT
TTAGATACTCATACTTTCCAACATTATCCTGTGTGATTACAGCATAGGGTCCATTTTGAT
AATGTGTCAAAGAACAATTTTCAACAGAGGAAATAAGATTTAGGTGGTTTGCAAACAATA
AGATGAGATGATGGAAAAATGCATTCGTTGTCAGGACTAAGTAATGATCGTCCAAACACT
AGCCAAAGAGGCGTTCAGCAGCTAAACTTAAAATAGTTTTCTAAATGTTCCTTTTTCTTT
TTTGAGTGTGCAATATCTAACATGTCTAAAATTAGGGCATTTTTCTTGGATCTTTTTGCA
GACCAACTAATTATAACTAGCTCTTGCCACAGAACTTTTCCCATGCATTTTGTTTTCTTT
TCCTCCCTTCTGCACAGGGAATTTGGCTCCCTTGCATCATCTTAGAGTTGCTCTTATTTC
TCATTAACCACATTAACCTCTTTAGGATGGTGTCTCTTTACTGTATTGATAATAGTAATG
GTTCCAGAAGGATAAGCCATTCTCCCTTTGACCATGTATCACGCACTTGGGTGTTTTTTT
CATGTTATTTCCTCTGATCACAATTTCTCTGCTACTGGGTTTTCATTGCTTTCTACAACT
CTTGAAAGATGGCAGTCTTCAAGGTTTTGCTTTTTAAGCCCTCTATGATGGGATCCTTAC
TTCATGTTTTTGGTGCATTCCTACACTCTGAAATCAGCCCTGCACAAGTATTTGAGAATA
AATGAGAATTTT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-217, gnl|bosTau2|chr10 (2882185-2882399)
               

               
               1-217, gnl|Hg17|chr8 (111637478-111637688)
               

               
               1-217, gnl|Mm7|chr12 (99429716-99428319)
               


               
               308-1150, gnl|bosTau2|chr21 (36502775-36501952)
               

               
               308-1150, gnl|Hg17|chr14 (91600512-91599687)
               

               
               308-1150, gnl|Mm7|chr12 (99418554-99417859)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-217, gnl|bosTau2|chr10 (2882185-2882399)
               

               
               1-217, gnl|Hg17|chr8 (111637478-111637688)
               

               
               1-217, gnl|Mm7|chr12 (99429716-99428319)
               


               
               308-1150, gnl|bosTau2|chr21 (36502775-36501952)
               

               
               308-1150, gnl|Hg17|chr14 (91600512-91599687)
               

               
               308-1150, gnl|Mm7|chr12 (99418554-99417859)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               med (0.116252)

	1-217, gnl\|bosTau2\|chr10 (2882185-2882399)
	1-217, gnl\|Hg17\|chr8 (111637478-111637688)
	1-217, gnl\|Mm7\|chr12 (99429716-99428319)

	308-1150, gnl\|bosTau2\|chr21 (36502775-36501952)
	308-1150, gnl\|Hg17\|chr14 (91600512-91599687)
	308-1150, gnl\|Mm7\|chr12 (99418554-99417859)