Non-Coding RNA Search

Ss1.1-rova026_b1.5

Sequence:


               
               GTTGTAACTAATTTATTCTATATTTCTCTCTTTTTTCTTGTAAAACAAGACTAAGAAGAT
TTTGATATTATATAATGTATTTCAGACAAGGGTATTTTCACTTACTATATATAACTATAT
ATATATATATAAGTTTAGGTATATTTCTGTGATCAAAAGTGCACTCCTTAAAAAATATAG
TTCTAAAGAAAAATAGCTCATATAAGCGAGTGTCCCCTGATTTAGTGAGAAACAGGTGTA
GTTTCAGGAGAATGTGGCAAACAATTCATTTGATCGACATAAATACTCAAAAGTTTGTCC
TTCCAGTTTTCCATCTTATTTCAAAGAATCAAAATTTTATTTTCCATCATACTTTTATGG
CACCTTTCTAATAACAAATTACGTAACATAGAAATTCCTTTTTGAAATCATTTCGTGTCA
CTTATTATGATACTAGATATATTTTAGACTTTGATGATCTTTAACATATTGATGGAAATA
GACTATATATGAGAGAATTTTTTTGCCTTAACACAACCATTTACTAATATATGATAATGG
TCGTAAATATGGCTTGACTACTAGCAAATATATTATTTTAGCATCTTGCCTTAGTTCCAT
TTTAATGGCTAGTATTCTCTTAATTAACAAATTGTTTCAAGCTTTATCATATTTGAAAAT
ATTGGCTAAAATTATTGGGTCCTTAGAAATTCCAAATGGAACTGGTTCACTCATCACTGA
GGAAAAAAAAATCAAATTTTCTCTGATAAGTAGTTATGCTCCAAATGAAATTTATTGGAT
GGATCCAATAAATAAAGGATCCATCCAATAAATAAAGAACTTAAATACACAAAGATAAAA
AAATATCCAAGTACCAAAATTTGCTGGCTCTTAGTTTTGAATGGCTACTCAAGGAAAGGG
TAGAAGGTTTAAAGGTAAAACATGATGCGTAACTCGTCACAATAAGCCCTTGCTTAGAAT
TAATATTTTCCTTTATGTATAAATACGTTGATGTTTCATGTCTTTTAAAAACTTGTGAAA
TAAAAGATTTAATCTTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTAACTAATTTATTCTATATTTCTCTCTTTTTTCTTGTAAAACAAGACTAAGAAGAT
TTTGATATTATATAATGTATTTCAGACAAGGGTATTTTCACTTACTATATATAACTATAT
ATATATATATAAGTTTAGGTATATTTCTGTGATCAAAAGTGCACTCCTTAAAAAATATAG
TTCTAAAGAAAAATAGCTCATATAAGCGAGTGTCCCCTGATTTAGTGAGAAACAGGTGTA
GTTTCAGGAGAATGTGGCAAACAATTCATTTGATCGACATAAATACTCAAAAGTTTGTCC
TTCCAGTTTTCCATCTTATTTCAAAGAATCAAAATTTTATTTTCCATCATACTTTTATGG
CACCTTTCTAATAACAAATTACGTAACATAGAAATTCCTTTTTGAAATCATTTCGTGTCA
CTTATTATGATACTAGATATATTTTAGACTTTGATGATCTTTAACATATTGATGGAAATA
GACTATATATGAGAGAATTTTTTTGCCTTAACACAACCATTTACTAATATATGATAATGG
TCGTAAATATGGCTTGACTACTAGCAAATATATTATTTTAGCATCTTGCCTTAGTTCCAT
TTTAATGGCTAGTATTCTCTTAATTAACAAATTGTTTCAAGCTTTATCATATTTGAAAAT
ATTGGCTAAAATTATTGGGTCCTTAGAAATTCCAAATGGAACTGGTTCACTCATCACTGA
GGAAAAAAAAATCAAATTTTCTCTGATAAGTAGTTATGCTCCAAATGAAATTTATTGGAT
GGATCCAATAAATAAAGGATCCATCCAATAAATAAAGAACTTAAATACACAAAGATAAAA
AAATATCCAAGTACCAAAATTTGCTGGCTCTTAGTTTTGAATGGCTACTCAAGGAAAGGG
TAGAAGGTTTAAAGGTAAAACATGATGCGTAACTCGTCACAATAAGCCCTTGCTTAGAAT
TAATATTTTCCTTTATGTATAAATACGTTGATGTTTCATGTCTTTTAAAAACTTGTGAAA
TAAAAGATTTAATCTTCAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               697-814, - strand, RNAz p=0.64695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               697-814, - strand, RNAz p=0.64695

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1012, gnl|bosTau2|chr4 (20087435-20088410)
               

               
               1-1012, gnl|Hg17|chr7 (76468345-76467442)
               

               
               1-1012, gnl|Mm7|chr5 (20415214-20416012)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1012, gnl|bosTau2|chr4 (20087435-20088410)
               

               
               1-1012, gnl|Hg17|chr7 (76468345-76467442)
               

               
               1-1012, gnl|Mm7|chr5 (20415214-20416012)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	1-1012, gnl\|bosTau2\|chr4 (20087435-20088410)
	1-1012, gnl\|Hg17\|chr7 (76468345-76467442)
	1-1012, gnl\|Mm7\|chr5 (20415214-20416012)

	nms (0.213858)
	mcp (0.170648)
	nco (0.161734)
	fco (0.157208)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	nca (0.136874)
	ste (0.135208)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	jej (0.0989218)