Non-Coding RNA Search

Ss1.1-rova026_e3.5

Sequence:


               
               GATGCGCAAGCAGAAGCTAGAAGAAGAGATGAAGCAGCTGGAGCATGACATTGCTGTCCT
CGAAAAGCACAAAATCATTTATATTGCTAATAAGAAATAGTGGACTTTTTAAATGTGGTC
ATATTAACATAGGAGAAACCATGGAAAACATAAAAATGAAACCATGAGTTTTTCAAAAAA
GAAAATACCATGAAGAGTATAAAAATGGCCTTTACCAAAATGCTTAGGCAATGTTTAAAG
AGTAATTGGTTTATTTACTTATGCAGAGAAAAAATTTTTTTACTAGTGTCAAGGCTTCCA
TATATAACCTGATAAAAGTTTGATATTAGGTTTTCTAGCTCTGTAGCATAATTCATTATT
ACTATATGCTTGTTTTAGAGAAACATTTCTGGGCCCTGAAAAAATAAAGTCAGCACTCAG
AACTTCACATTTTTTCTAAACTGCATAATACAAGGAACACAACATTAAAAACTGGTAAAG
TATTTTGCATTGGAAATAGTGGCATAAGCTTTTTTTACTGCTCTGAAGTGTTTTCTACCT
ATTGTTTCAGAGATCCACAAATGACATACATTCTCCAGTAGCCTGTGTCATGTGTGGCTA
TTCACACCTATAAACATTTTTAATGTCCGTGATGTTATATAGGCTGAGAGTTTTACATTT
GGAGGAAGGAAAATTAAGAAGACAACATAAAATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCGCAAGCAGAAGCTAGAAGAAGAGATGAAGCAGCTGGAGCATGACATTGCTGTCCT
CGAAAAGCACAAAATCATTTATATTGCTAATAAGAAATAGTGGACTTTTTAAATGTGGTC
ATATTAACATAGGAGAAACCATGGAAAACATAAAAATGAAACCATGAGTTTTTCAAAAAA
GAAAATACCATGAAGAGTATAAAAATGGCCTTTACCAAAATGCTTAGGCAATGTTTAAAG
AGTAATTGGTTTATTTACTTATGCAGAGAAAAAATTTTTTTACTAGTGTCAAGGCTTCCA
TATATAACCTGATAAAAGTTTGATATTAGGTTTTCTAGCTCTGTAGCATAATTCATTATT
ACTATATGCTTGTTTTAGAGAAACATTTCTGGGCCCTGAAAAAATAAAGTCAGCACTCAG
AACTTCACATTTTTTCTAAACTGCATAATACAAGGAACACAACATTAAAAACTGGTAAAG
TATTTTGCATTGGAAATAGTGGCATAAGCTTTTTTTACTGCTCTGAAGTGTTTTCTACCT
ATTGTTTCAGAGATCCACAAATGACATACATTCTCCAGTAGCCTGTGTCATGTGTGGCTA
TTCACACCTATAAACATTTTTAATGTCCGTGATGTTATATAGGCTGAGAGTTTTACATTT
GGAGGAAGGAAAATTAAGAAGACAACATAAAATCAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr13 (14179993-14180692)
               

               
               1-696, gnl|Hg17|chr10 (25313763-25313053)
               

               
               1-696, gnl|Mm7|chr2 (21246200-21245483)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr13 (14179993-14180692)
               

               
               1-696, gnl|Hg17|chr10 (25313763-25313053)
               

               
               1-696, gnl|Mm7|chr2 (21246200-21245483)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	1-696, gnl\|bosTau2\|chr13 (14179993-14180692)
	1-696, gnl\|Hg17\|chr10 (25313763-25313053)
	1-696, gnl\|Mm7\|chr2 (21246200-21245483)

	tes (0.207814)
	sag (0.182715)
	mgm (0.180343)
	fbs (0.175346)
	cje (0.165235)
	fco (0.157208)
	ova (0.129132)
	tra (0.123092)