Non-Coding RNA Search

Ss1.1-rova027_e10.5

Sequence:


               
               CTGCTCAGCTGCGTCATGGGCCCCCCATGCATACGTACATTCCTGGACATCCTCACCACC
CCGCAGTGATGATGCATGGAGGACAGCCCCACCCTGGAATGCCAATATCAGCGTCAAGCC
CCTCGGTTCTTAATACAGGAGACCCGACAATGAGTGGACAAGTCATGAACATTCATGCTC
AGTAGCTTAAGGGAATACGCATGGTCTGCAATGGTGACTGATTTCAAATCATGTTTTTTT
CTGCAATGACTGTGGAGTTCCATTCTTGGCATCTACTTTGGACCAAGGAGCATCCCTAAT
TCTTCCTAGGGACTCTTAAAAAAAGCAGGAGATACCAACCGAAGTCAATCTGGGGGACAT
GCTAAATAACTATATAAGACATTAAGAGAACAAAGAGTGAAATATTGTAAATGCTTATTA
TACTGTTATCCATATTACGTTGTTTCTTATAGATTTTTTAAAAAAAATGTGAAATTTTTC
CACACTATGTGTGTTGTTTCCATAGCTCTTCACTTCCTCCAGAAGCCTCCTTACATTAAA
AAGCCTTACAGTTATCCTGCAAGGGACAGGACGGTCTGATTTGCAGGATTTTTAGAGCAT
TAAAATAACTATCAGGCAGAAGAAGCTTTCTTCTCGCCTAGGATTTCAGCCATGCGCGCT
CTCTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTCAGCTGCGTCATGGGCCCCCCATGCATACGTACATTCCTGGACATCCTCACCACC
CCGCAGTGATGATGCATGGAGGACAGCCCCACCCTGGAATGCCAATATCAGCGTCAAGCC
CCTCGGTTCTTAATACAGGAGACCCGACAATGAGTGGACAAGTCATGAACATTCATGCTC
AGTAGCTTAAGGGAATACGCATGGTCTGCAATGGTGACTGATTTCAAATCATGTTTTTTT
CTGCAATGACTGTGGAGTTCCATTCTTGGCATCTACTTTGGACCAAGGAGCATCCCTAAT
TCTTCCTAGGGACTCTTAAAAAAAGCAGGAGATACCAACCGAAGTCAATCTGGGGGACAT
GCTAAATAACTATATAAGACATTAAGAGAACAAAGAGTGAAATATTGTAAATGCTTATTA
TACTGTTATCCATATTACGTTGTTTCTTATAGATTTTTTAAAAAAAATGTGAAATTTTTC
CACACTATGTGTGTTGTTTCCATAGCTCTTCACTTCCTCCAGAAGCCTCCTTACATTAAA
AAGCCTTACAGTTATCCTGCAAGGGACAGGACGGTCTGATTTGCAGGATTTTTAGAGCAT
TAAAATAACTATCAGGCAGAAGAAGCTTTCTTCTCGCCTAGGATTTCAGCCATGCGCGCT
CTCTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.725158
               

               
               200-319, - strand, RNAz p=0.622284
               

               
               479-700, - strand, RNAz p=0.962842

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.725158
               

               
               200-319, - strand, RNAz p=0.622284
               

               
               479-700, - strand, RNAz p=0.962842

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               241-353, - strand, RNAmicro p=0.905076

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               241-353, - strand, RNAmicro p=0.905076

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-700, gnl|bosTau2|chr11 (46915906-46915209)
               

               
               1-700, gnl|Hg17|chr2 (66710128-66710824)
               

               
               1-700, gnl|Mm7|chr11 (18833832-18833095)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-700, gnl|bosTau2|chr11 (46915906-46915209)
               

               
               1-700, gnl|Hg17|chr2 (66710128-66710824)
               

               
               1-700, gnl|Mm7|chr11 (18833832-18833095)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	1-119, - strand, RNAz p=0.725158
	200-319, - strand, RNAz p=0.622284
	479-700, - strand, RNAz p=0.962842

	1-700, gnl\|bosTau2\|chr11 (46915906-46915209)
	1-700, gnl\|Hg17\|chr2 (66710128-66710824)
	1-700, gnl\|Mm7\|chr11 (18833832-18833095)