Non-Coding RNA Search

Ss1.1-rova027_e2.5

Sequence:


               
               CATCCTCATAGATTCTAGTTGGGTTCGTTGCTTCTGAGCCACCACCGAAACTCCCAAGAT
TTCATTCTTATTACACTTTTCTTTCTGCATATTATTCATAGAGCATAATGTTGCATTTCT
CTAAATTTTATCCCTGGAAGGAAAACATCGCTTCCTAACTTATCCTTCTGTCTTTGTGCT
TTGTCCTTATCTTCTGTGGCAAAGCCTTCTCTTTGTTCCTAAGATAGTTAATCTTGTGAA
ATAAATATTGATGATCACCCAGAAGGATCTCTGTATCTTACAGTGGGGATGTCCTATTTA
ATACACCAGCATTAATCCTTTAATAACTGGCATAGCACTTTATTCTTCTGGTGAGCTACC
TGAATATTTATTTTTCTGATTATAAATATTCCATGTCAGTAGCATTTTTGTAATTATTAC
CTCTTTATTGTAGAGCAGTACTTTTTATCTCTCTGGATGTATATTTTGGATGCTGTGCAT
ATAATACAGATTAAAATCACTGTTCCTGATGCCAAGACATCCCCTGCTCGTGTTTCCCAG
TTTTCAAATGTTAGTGAAAGTTCAGATGTACAACAGTTCATTTCTCCAAGGACCAACCGT
TGCTCTCAGAAGTAGCTGCCCAAAAATAACGCCCTCTGCTTATGCTCGTAGCATTATTTC
CTGTGGATACAGGTTACATTTAGAGTCTCAACTAAAACCTGATCATTTGGTCACAGTATG
AAGACAAGGAGAAATAAAAGTGTAAAGTCTTCAACATGTTGGTGCAGCTTTATATTTAAA
AATGATCTACAACAAAAAGGTATTTGGGATACCAGTTTCAAGGACCACTTTTACTGAAAG
TAATTCCTCTTCCCTGTTCCAGTGTGAATGTGGTGGTGTACTAATATTTCTGTGATATTT
GGGTTTAGTCACCCCTATTGAAAGGAGAGGCCTTTCAGACATAAGGGAAGGGAACATACC
CTGAATAATTTTACACGAATTTAATGTGGCTTCAGTTTGTTACCTCTTCACCCCCTCCAT
ATTTTAAGGTATTGGATTTGGATTTTCAGTGTATCATTTGCCTTATGTATTAATCCCTAT
CCTATGTTTCTTTACATTTTTCCGTTTGCATATGTCTGTTCTGTTTTGCTTGTGGATATG
TCTTCTAATTAAAAACCACATGAGAAATATAGTCAGTATGGTAATACCCTAAGTGCACAT
ATTCAATAAATAAATGGCTGCAGTGATACAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCTCATAGATTCTAGTTGGGTTCGTTGCTTCTGAGCCACCACCGAAACTCCCAAGAT
TTCATTCTTATTACACTTTTCTTTCTGCATATTATTCATAGAGCATAATGTTGCATTTCT
CTAAATTTTATCCCTGGAAGGAAAACATCGCTTCCTAACTTATCCTTCTGTCTTTGTGCT
TTGTCCTTATCTTCTGTGGCAAAGCCTTCTCTTTGTTCCTAAGATAGTTAATCTTGTGAA
ATAAATATTGATGATCACCCAGAAGGATCTCTGTATCTTACAGTGGGGATGTCCTATTTA
ATACACCAGCATTAATCCTTTAATAACTGGCATAGCACTTTATTCTTCTGGTGAGCTACC
TGAATATTTATTTTTCTGATTATAAATATTCCATGTCAGTAGCATTTTTGTAATTATTAC
CTCTTTATTGTAGAGCAGTACTTTTTATCTCTCTGGATGTATATTTTGGATGCTGTGCAT
ATAATACAGATTAAAATCACTGTTCCTGATGCCAAGACATCCCCTGCTCGTGTTTCCCAG
TTTTCAAATGTTAGTGAAAGTTCAGATGTACAACAGTTCATTTCTCCAAGGACCAACCGT
TGCTCTCAGAAGTAGCTGCCCAAAAATAACGCCCTCTGCTTATGCTCGTAGCATTATTTC
CTGTGGATACAGGTTACATTTAGAGTCTCAACTAAAACCTGATCATTTGGTCACAGTATG
AAGACAAGGAGAAATAAAAGTGTAAAGTCTTCAACATGTTGGTGCAGCTTTATATTTAAA
AATGATCTACAACAAAAAGGTATTTGGGATACCAGTTTCAAGGACCACTTTTACTGAAAG
TAATTCCTCTTCCCTGTTCCAGTGTGAATGTGGTGGTGTACTAATATTTCTGTGATATTT
GGGTTTAGTCACCCCTATTGAAAGGAGAGGCCTTTCAGACATAAGGGAAGGGAACATACC
CTGAATAATTTTACACGAATTTAATGTGGCTTCAGTTTGTTACCTCTTCACCCCCTCCAT
ATTTTAAGGTATTGGATTTGGATTTTCAGTGTATCATTTGCCTTATGTATTAATCCCTAT
CCTATGTTTCTTTACATTTTTCCGTTTGCATATGTCTGTTCTGTTTTGCTTGTGGATATG
TCTTCTAATTAAAAACCACATGAGAAATATAGTCAGTATGGTAATACCCTAAGTGCACAT
ATTCAATAAATAAATGGCTGCAGTGATACAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               58-1235, gnl|bosTau2|chr6 (12790495-12789344)
               

               
               58-1235, gnl|Hg17|chr4 (95945037-95946555)
               

               
               58-1235, gnl|Mm7|chr3 (142133648-142132530)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-1235, gnl|bosTau2|chr6 (12790495-12789344)
               

               
               58-1235, gnl|Hg17|chr4 (95945037-95946555)
               

               
               58-1235, gnl|Mm7|chr3 (142133648-142132530)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               aor (0.585823)
               

               
               sin (0.524843)
               

               
               sug (0.509165)
               

               
               liv (0.438853)
               

               
               lyg (0.399308)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               spc (0.340097)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               sin (0.524843)
               

               
               sug (0.509165)
               

               
               liv (0.438853)
               

               
               lyg (0.399308)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               spc (0.340097)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

	58-1235, gnl\|bosTau2\|chr6 (12790495-12789344)
	58-1235, gnl\|Hg17\|chr4 (95945037-95946555)
	58-1235, gnl\|Mm7\|chr3 (142133648-142132530)

	aor (0.585823)
	sin (0.524843)
	sug (0.509165)
	liv (0.438853)
	lyg (0.399308)
	tra (0.369276)
	sag (0.36543)
	gul (0.355177)
	spc (0.340097)
	fce (0.271592)
	ret (0.257467)
	tes (0.207814)
	fcc (0.197785)
	ton (0.1755)
	duo (0.172801)
	fhi (0.169578)
	fco (0.157208)
	che (0.136314)
	ova (0.129132)
	eje (0.0988338)