Non-Coding RNA Search

Ss1.1-rova027_n19.5

Sequence:


               
               CAAAAAGTCAAAAACCTACATCCTTCCTGGATTCTGAGTGAGTTCCATGGATGCAATGTG
AACGCGTCCACCTACATGCTTCGAACTAATCAGTGGAAGTATATAACCTACTCTGATGGG
GCTTCAGTATTGCCTCAACTCTTTGATCTTTCCTCAGATCCAGATGAACTAACAAATATT
GCCACAAAATTTCCAGAAGTTACTTCTTCTTTGGATCAGAAGCTTCGTTCCATTATAAAT
TACCCTAAGGTTTCTGCTTCTGTCCACCAGTACAATAAAGAGCAGTTTATCAAGTGGAAA
CAAAGTATAGGGCAAAACTATTCAAATGTCATAGCAAACCTCAGGTGGCATCAGGACTGG
CTGAAAGAACCAAGGAAGTATGAAAGTGCCATCGATCAGTGGCTTAAAACCTACTCTGAT
CCAAAAAAAATTTGAACAAAAATAGGAAAATAATGTTCTAGAGCTATATAGAAATATGTG
AAAAGACCGTGATTAATTATGCATTTTAAACATTAGTTTTAATAATTACTGATTTCCCCC
CAAGGAAATACTGACTTTTTGTTGAAGAGTGTATCTTTTAAAATACTAATCATGATAGAA
TTATATATTTTCAAAATGATTACTTCAAGACCTATTCTTACCAACTTCTAACAATTTAAT
GGAAATATTAAAAGGATGGAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAGTCAAAAACCTACATCCTTCCTGGATTCTGAGTGAGTTCCATGGATGCAATGTG
AACGCGTCCACCTACATGCTTCGAACTAATCAGTGGAAGTATATAACCTACTCTGATGGG
GCTTCAGTATTGCCTCAACTCTTTGATCTTTCCTCAGATCCAGATGAACTAACAAATATT
GCCACAAAATTTCCAGAAGTTACTTCTTCTTTGGATCAGAAGCTTCGTTCCATTATAAAT
TACCCTAAGGTTTCTGCTTCTGTCCACCAGTACAATAAAGAGCAGTTTATCAAGTGGAAA
CAAAGTATAGGGCAAAACTATTCAAATGTCATAGCAAACCTCAGGTGGCATCAGGACTGG
CTGAAAGAACCAAGGAAGTATGAAAGTGCCATCGATCAGTGGCTTAAAACCTACTCTGAT
CCAAAAAAAATTTGAACAAAAATAGGAAAATAATGTTCTAGAGCTATATAGAAATATGTG
AAAAGACCGTGATTAATTATGCATTTTAAACATTAGTTTTAATAATTACTGATTTCCCCC
CAAGGAAATACTGACTTTTTGTTGAAGAGTGTATCTTTTAAAATACTAATCATGATAGAA
TTATATATTTTCAAAATGATTACTTCAAGACCTATTCTTACCAACTTCTAACAATTTAAT
GGAAATATTAAAAGGATGGAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869358|ref|XP_616765.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869358|ref|XP_616765.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-143, gnl|bosTau2|chr7 (59508367-59508509)
               

               
               1-143, gnl|Hg17|chr5 (94962387-94962529)
               

               
               1-143, gnl|Mm7|chr13 (73077028-73076886)
               


               
               145-626, gnl|bosTau2|chr7 (59510637-59511100)
               

               
               145-626, gnl|Hg17|chr5 (94964696-94965100)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chr7 (59508367-59508509)
               

               
               1-143, gnl|Hg17|chr5 (94962387-94962529)
               

               
               1-143, gnl|Mm7|chr13 (73077028-73076886)
               


               
               145-626, gnl|bosTau2|chr7 (59510637-59511100)
               

               
               145-626, gnl|Hg17|chr5 (94964696-94965100)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               spc (0.113366)

	1-143, gnl\|bosTau2\|chr7 (59508367-59508509)
	1-143, gnl\|Hg17\|chr5 (94962387-94962529)
	1-143, gnl\|Mm7\|chr13 (73077028-73076886)

	145-626, gnl\|bosTau2\|chr7 (59510637-59511100)
	145-626, gnl\|Hg17\|chr5 (94964696-94965100)