Non-Coding RNA Search

Ss1.1-rova027_n21.5

Sequence:


               
               GGATCTAAGTATTTCAGTGCACAACTTGGTAAAAACCACATTGCTGCTGTTTCTAAATCC
TCCACCAACCAAATTTTCATGTCCAGCATTGTAGAGGCAGAAACAACATAATCATTTTTG
GGGGTTTGGGGGGTTTTGTCTTTCGTTGATTCTTCTCTCAATGATCATTTCCCAACCATG
TCTCTTTTAGCTGTTGAGTGTACAAATTTAGAATTATGAAAATGTTTTATATTTTTTTCA
TGATTAACTTTTATCAGTGAATGATAACAACTTCAGTATTTAATCCTAGTAGTGGGTTAA
AAAGACAAGGAGCCTTTTTTATTTGAATTACATTTGTAAATGAAAGCCACAGTCTGAATA
TTCAGAGGACTACTCCAAAATAGTTCCTTTGACTTTTTTCTTAGTACTTTTCCAGCATAT
GTTCTCCTGTGAACTCTTACTTTGCTGCATTTTGTGGTTAATTTGATGGATATATCCTGC
CTTATTTAGAATTGTAACTGGATTAAAAAAAAAATGCCTTTTCATGATAAGAGCCCAATT
TTGGTCTCGAGTTTGAAGGTACTGCCGAGAAAGAAAACCACCACTCCCCTCCCCCCAGTT
TTTGTTTCCCGAAACGATTCAGTACCGTGTCATAATGGGGCTCAACCAGAATTGGACCTG
CACCTATGTGAGTGTTTAGGGTTTGAAAATAAGGTTTTGGGTGTAAGAAATCACTACACA
AGTGCTAAATGTATTAAGAACTTGCTGATTGTATTTATGATCATTTTAGATTATTTCACG
TTTGCAGAAATGTAGCACTTTTCCTCCAAATTTATGGGTGTAAGAAAAAAGGGGGCAAGG
TGCATCATGTTTTAAATTTGCAAATGAGTGAAAATTTTTTTCATTTTGAAATCCAGATGC
CCAAAAGGAGACTTCACCACCCAGGTCACATACTTCTCAGCCTTTTACGAGCCAACAGAC
TCAAGATTGTCCACAGTTCCTAAGATTTAGCACATATACAAAAATAAAACTTTATAAATT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCTAAGTATTTCAGTGCACAACTTGGTAAAAACCACATTGCTGCTGTTTCTAAATCC
TCCACCAACCAAATTTTCATGTCCAGCATTGTAGAGGCAGAAACAACATAATCATTTTTG
GGGGTTTGGGGGGTTTTGTCTTTCGTTGATTCTTCTCTCAATGATCATTTCCCAACCATG
TCTCTTTTAGCTGTTGAGTGTACAAATTTAGAATTATGAAAATGTTTTATATTTTTTTCA
TGATTAACTTTTATCAGTGAATGATAACAACTTCAGTATTTAATCCTAGTAGTGGGTTAA
AAAGACAAGGAGCCTTTTTTATTTGAATTACATTTGTAAATGAAAGCCACAGTCTGAATA
TTCAGAGGACTACTCCAAAATAGTTCCTTTGACTTTTTTCTTAGTACTTTTCCAGCATAT
GTTCTCCTGTGAACTCTTACTTTGCTGCATTTTGTGGTTAATTTGATGGATATATCCTGC
CTTATTTAGAATTGTAACTGGATTAAAAAAAAAATGCCTTTTCATGATAAGAGCCCAATT
TTGGTCTCGAGTTTGAAGGTACTGCCGAGAAAGAAAACCACCACTCCCCTCCCCCCAGTT
TTTGTTTCCCGAAACGATTCAGTACCGTGTCATAATGGGGCTCAACCAGAATTGGACCTG
CACCTATGTGAGTGTTTAGGGTTTGAAAATAAGGTTTTGGGTGTAAGAAATCACTACACA
AGTGCTAAATGTATTAAGAACTTGCTGATTGTATTTATGATCATTTTAGATTATTTCACG
TTTGCAGAAATGTAGCACTTTTCCTCCAAATTTATGGGTGTAAGAAAAAAGGGGGCAAGG
TGCATCATGTTTTAAATTTGCAAATGAGTGAAAATTTTTTTCATTTTGAAATCCAGATGC
CCAAAAGGAGACTTCACCACCCAGGTCACATACTTCTCAGCCTTTTACGAGCCAACAGAC
TCAAGATTGTCCACAGTTCCTAAGATTTAGCACATATACAAAAATAAAACTTTATAAATT
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.814733
               

               
               757-911, + strand, RNAz p=0.981402

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.814733
               

               
               757-911, + strand, RNAz p=0.981402

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1023, gnl|bosTau2|chrX (28892479-28891468)
               

               
               1-1023, gnl|Hg17|chrX (40851096-40852086)
               

               
               1-1023, gnl|Mm7|chrX (11605458-11606478)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1023, gnl|bosTau2|chrX (28892479-28891468)
               

               
               1-1023, gnl|Hg17|chrX (40851096-40852086)
               

               
               1-1023, gnl|Mm7|chrX (11605458-11606478)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               amn (0.835422)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               spc (0.226732)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               spc (0.226732)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	1-119, - strand, RNAz p=0.814733
	757-911, + strand, RNAz p=0.981402

	1-1023, gnl\|bosTau2\|chrX (28892479-28891468)
	1-1023, gnl\|Hg17\|chrX (40851096-40852086)
	1-1023, gnl\|Mm7\|chrX (11605458-11606478)

	amn (0.835422)
	elu (0.385356)
	gul (0.355177)
	rec (0.346141)
	liv (0.292569)
	pla (0.267344)
	ute (0.265569)
	spc (0.226732)
	sin (0.174948)
	eye (0.170503)
	tbr (0.154178)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	hyp (0.142837)
	ste (0.135208)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)