Ss1.1-rova033_g18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCCTTATCATAAACCACTGCAACATGTTCGTGACTGGCCAGAAATTCTTGCTGAATT GACTAATTTGGATCCCCAAAGGGAAACACCACAGCTTTTCCTAAGAAGAGATGTGAGACT TCCTTTGGAAATTGAGAAAAAGATTGAAGACCCACTAGCTATTCTCATTCTTTTTGATGA AGCCAGATATAATTTATTGAAGGGCTTTTATACAGCTCCTGATGCTAAACTGATAACATT GGCAAGTCTGCTGTTGCAAATAGTTTATGGAAATTATGAGAGTAAAAAACACAAGCAAGG TTTCCTAAATGAAGAAAATCTAAAATCCATTGTACCTATTACCAAATTGAAAAGTAAGGC ACCTCACTGGACAAATAGAATACTTCATGAATACAAGAATCTTAGTACAAGTGAAGGTAT CAGTAAAGAAATGCATCACCTTCAGCGTATGTTCTTACAGAATTGTTGGGAAATCCCTAC ATATGGAGCAGCTTTTTTCACAGGACAGATATTTACAAAGGCCAGCCCTAGTAACCATAA AGTCATCCCTGTGTATGTAGGTGTGAATATAAAAGGACTTCATCTCCTCAACATGGAAAC TAAGGCTTTACTCATCAGTCTTAAGTATGGTTGTTTTATGTGGCAGTTGGGAGATGCTGA TACTTGTTTTCAGATCCATAGTATGGAAAATAAAATGAGCTTTATTGTACATACAAAACA GGCCAGCCTTGTGGTAAAACTACTAATGAAGCTAAATGGACAGTTAATGCCAACTGAAAG GAATTCATGAGAGGAAAGCAACTGATACCTAAGCCACCACATTTTGTAATGTAGATTTTT TTCCGTGAAAGATTTCTTCAACTTACATTTAACAAGGCATTTAGTCTCTTGTAATATATA TGTATACTACTACATTGTACAGAATCTGTACTTATGTTTGGTGTGTAAGATACCAGTTAG TTTTATATAATATCCACATAAGCTAATTAGTTTTTAAGAGAAACACACAAAAAGGTATAG ACTGATAGCCTGTATAATATTAGACAAAATAGTAGACTTATAAAAAGTTATTTTTGGTAA ATGTAAAGAATTTAGAGTGGAATGTGATGAAATTAAAATGTAGCTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCCTTATCATAAACCACTGCAACATGTTCGTGACTGGCCAGAAATTCTTGCTGAATT GACTAATTTGGATCCCCAAAGGGAAACACCACAGCTTTTCCTAAGAAGAGATGTGAGACT TCCTTTGGAAATTGAGAAAAAGATTGAAGACCCACTAGCTATTCTCATTCTTTTTGATGA AGCCAGATATAATTTATTGAAGGGCTTTTATACAGCTCCTGATGCTAAACTGATAACATT GGCAAGTCTGCTGTTGCAAATAGTTTATGGAAATTATGAGAGTAAAAAACACAAGCAAGG TTTCCTAAATGAAGAAAATCTAAAATCCATTGTACCTATTACCAAATTGAAAAGTAAGGC ACCTCACTGGACAAATAGAATACTTCATGAATACAAGAATCTTAGTACAAGTGAAGGTAT CAGTAAAGAAATGCATCACCTTCAGCGTATGTTCTTACAGAATTGTTGGGAAATCCCTAC ATATGGAGCAGCTTTTTTCACAGGACAGATATTTACAAAGGCCAGCCCTAGTAACCATAA AGTCATCCCTGTGTATGTAGGTGTGAATATAAAAGGACTTCATCTCCTCAACATGGAAAC TAAGGCTTTACTCATCAGTCTTAAGTATGGTTGTTTTATGTGGCAGTTGGGAGATGCTGA TACTTGTTTTCAGATCCATAGTATGGAAAATAAAATGAGCTTTATTGTACATACAAAACA GGCCAGCCTTGTGGTAAAACTACTAATGAAGCTAAATGGACAGTTAATGCCAACTGAAAG GAATTCATGAGAGGAAAGCAACTGATACCTAAGCCACCACATTTTGTAATGTAGATTTTT TTCCGTGAAAGATTTCTTCAACTTACATTTAACAAGGCATTTAGTCTCTTGTAATATATA TGTATACTACTACATTGTACAGAATCTGTACTTATGTTTGGTGTGTAAGATACCAGTTAG TTTTATATAATATCCACATAAGCTAATTAGTTTTTAAGAGAAACACACAAAAAGGTATAG ACTGATAGCCTGTATAATATTAGACAAAATAGTAGACTTATAAAAAGTTATTTTTGGTAA ATGTAAAGAATTTAGAGTGGAATGTGATGAAATTAAAATGTAGCTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 854-1010, + strand, RNAz p=0.626621 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 854-1010, + strand, RNAz p=0.626621 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 140-333, gnl|bosTau2|chr4 (991146-990952) | |
| 140-333, gnl|Hg17|chr7 (91488745-91488551) | |
| 140-333, gnl|Mm7|chr5 (3836609-3836803) | |
| 396-605, gnl|bosTau2|chr4 (989806-989597) | |
| 396-605, gnl|canFam2|chr14 (20790496-20790723) | |
| 396-605, gnl|danRer3|chr19 (27930441-27930658) | |
| 396-605, gnl|dasNov1|scaffold_5955 (52806-53026) | |
| 396-605, gnl|echTel1|scaffold_315915 (227552-227769) | |
| 396-605, gnl|fr1|chrUn (220567950-220568163) | |
| 396-605, gnl|galGal2|chr2 (21824761-21824978) | |
| 396-605, gnl|hg17|chr7 (91487153-91487370) | |
| 396-605, gnl|Hg17|chr7 (91487368-91487159) | |
| 396-605, gnl|loxAfr1|scaffold_33276 (20290-20504) | |
| 396-605, gnl|mm7|chr5 (3838241-3838024) | |
| 396-605, gnl|Mm7|chr5 (3838024-3838233) | |
| 396-605, gnl|monDom2|scaffold_7 (60168567-60168784) | |
| 396-605, gnl|oryCun1|scaffold_206745 (114924-115141) | |
| 396-605, gnl|panTro1|chr6 (93042713-93042930) | |
| 396-605, gnl|rheMac2|chr3 (125049214-125048997) | |
| 396-605, gnl|rn3|chr4 (27040753-27040970) | |
| 396-605, gnl|tetNig1|chr21_random (1877777-1877563) | |
| 396-605, gnl|xenTro1|scaffold_182 (211103-210889) | |
| 720-1128, gnl|bosTau2|chr4 (984076-983671) | |
| 720-1128, gnl|Hg17|chr7 (91474771-91474056) | |
| 720-1128, gnl|Mm7|chr5 (3846878-3847288) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-333, gnl|bosTau2|chr4 (991146-990952) | |
| 140-333, gnl|Hg17|chr7 (91488745-91488551) | |
| 140-333, gnl|Mm7|chr5 (3836609-3836803) | |
| 396-605, gnl|bosTau2|chr4 (989806-989597) | |
| 396-605, gnl|canFam2|chr14 (20790496-20790723) | |
| 396-605, gnl|danRer3|chr19 (27930441-27930658) | |
| 396-605, gnl|dasNov1|scaffold_5955 (52806-53026) | |
| 396-605, gnl|echTel1|scaffold_315915 (227552-227769) | |
| 396-605, gnl|fr1|chrUn (220567950-220568163) | |
| 396-605, gnl|galGal2|chr2 (21824761-21824978) | |
| 396-605, gnl|hg17|chr7 (91487153-91487370) | |
| 396-605, gnl|Hg17|chr7 (91487368-91487159) | |
| 396-605, gnl|loxAfr1|scaffold_33276 (20290-20504) | |
| 396-605, gnl|mm7|chr5 (3838241-3838024) | |
| 396-605, gnl|Mm7|chr5 (3838024-3838233) | |
| 396-605, gnl|monDom2|scaffold_7 (60168567-60168784) | |
| 396-605, gnl|oryCun1|scaffold_206745 (114924-115141) | |
| 396-605, gnl|panTro1|chr6 (93042713-93042930) | |
| 396-605, gnl|rheMac2|chr3 (125049214-125048997) | |
| 396-605, gnl|rn3|chr4 (27040753-27040970) | |
| 396-605, gnl|tetNig1|chr21_random (1877777-1877563) | |
| 396-605, gnl|xenTro1|scaffold_182 (211103-210889) | |
| 720-1128, gnl|bosTau2|chr4 (984076-983671) | |
| 720-1128, gnl|Hg17|chr7 (91474771-91474056) | |
| 720-1128, gnl|Mm7|chr5 (3846878-3847288) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| fco (0.628832) | |
| tra (0.369276) | |
| vin (0.332557) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| sag (0.182715) | |
| rec (0.17307) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.628832) | |
| tra (0.369276) | |
| vin (0.332557) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| sag (0.182715) | |
| rec (0.17307) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| cty (0.10408) |