Non-Coding RNA Search

Ss1.1-rova033_l17.5

Sequence:


               
               GGACCAGGACAGGACCAGGACTTCAGTATCTGGCCCGGCTGCAGGAAGGGGGTTGGGATC
CTGACTTGACATAGTTAGAACCTCACAGATACCAGCTCCCAGGCTGCTGGCCCATCAGGG
CTCACTGAACGCCCTTCTCTCCTGCTCTTTTCTCCCTCATTCTCCCTCTGCCCAGAAGTG
GGCATTGGCCAGAGTTTGAGCACCTTGCCGGTCGCCTCTAATCCTCCAACCAAGGACCTC
CCAGGAACACCCTCTCAAGAGAAGCGTGTCCCTAGCAGACTAGTGCTACGTCTGCCCAGG
TGCAGGCTGTCTCTGGCCCCAGGCGTCTCTCCAGGGAGACTGAAAGGAAAAGAGACCCAA
GATGGAGGCTTTCAACCTGAGCACATCCTCTCCAGCTCCACTCTCTCCTTCTAAACTGAT
GGCTCCCCAGGACCGTCATTTCCAATGCTACAGACGCACGCGGGCACCAGCTCTTCTCTT
TCCAAGGAGACCTTGTTCTGTAGCTGCCGTGCAGAAGCCACAGCCTTGAACTCAGGCCAT
ACTCAGGAACAGCAGCAAGGGTGTGGGTGGGGATTGGAGGGATGGGTCTCTGAATTCACC
TTCATGTTTACCTGTTCCATCTAATTTGGGTTTGACTTCATCGTATTGTTCCCCCATCCT
CTTCACTTCTGTATTCCAGTAATATAAACTTTACTCTGAAACCTATTTCATACAAGTTAT
TAAACACTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCAGGACAGGACCAGGACTTCAGTATCTGGCCCGGCTGCAGGAAGGGGGTTGGGATC
CTGACTTGACATAGTTAGAACCTCACAGATACCAGCTCCCAGGCTGCTGGCCCATCAGGG
CTCACTGAACGCCCTTCTCTCCTGCTCTTTTCTCCCTCATTCTCCCTCTGCCCAGAAGTG
GGCATTGGCCAGAGTTTGAGCACCTTGCCGGTCGCCTCTAATCCTCCAACCAAGGACCTC
CCAGGAACACCCTCTCAAGAGAAGCGTGTCCCTAGCAGACTAGTGCTACGTCTGCCCAGG
TGCAGGCTGTCTCTGGCCCCAGGCGTCTCTCCAGGGAGACTGAAAGGAAAAGAGACCCAA
GATGGAGGCTTTCAACCTGAGCACATCCTCTCCAGCTCCACTCTCTCCTTCTAAACTGAT
GGCTCCCCAGGACCGTCATTTCCAATGCTACAGACGCACGCGGGCACCAGCTCTTCTCTT
TCCAAGGAGACCTTGTTCTGTAGCTGCCGTGCAGAAGCCACAGCCTTGAACTCAGGCCAT
ACTCAGGAACAGCAGCAAGGGTGTGGGTGGGGATTGGAGGGATGGGTCTCTGAATTCACC
TTCATGTTTACCTGTTCCATCTAATTTGGGTTTGACTTCATCGTATTGTTCCCCCATCCT
CTTCACTTCTGTATTCCAGTAATATAAACTTTACTCTGAAACCTATTTCATACAAGTTAT
TAAACACTACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               235-380, - strand, RNAz p=0.999212

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-380, - strand, RNAz p=0.999212

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               317-435, - strand, RNAmicro p=0.931757

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               317-435, - strand, RNAmicro p=0.931757

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               157-732, gnl|bosTau2|chr3 (65953858-65953278)
               

               
               157-732, gnl|Hg17|chr1 (50617712-50617139)
               

               
               157-732, gnl|Mm7|chr4 (109339874-109340392)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-732, gnl|bosTau2|chr3 (65953858-65953278)
               

               
               157-732, gnl|Hg17|chr1 (50617712-50617139)
               

               
               157-732, gnl|Mm7|chr4 (109339874-109340392)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               ecc (0.23007)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	157-732, gnl\|bosTau2\|chr3 (65953858-65953278)
	157-732, gnl\|Hg17\|chr1 (50617712-50617139)
	157-732, gnl\|Mm7\|chr4 (109339874-109340392)

	ecc (0.23007)
	cmu (0.186393)
	sto (0.179824)
	fbs (0.175346)
	ova (0.129132)
	pgl (0.118483)
	spc (0.113366)