Non-Coding RNA Search

Ss1.1-rova034_c15.5.5

Sequence:


               
               GTACTTTGGGGATCTTCTGCTGTTTGTAAAATATTAATGTCCAGTGTTGGATTATTTTGT
TTGATTTCAGACATTGGCTGAGTGTTTTTCTGCGAGTATTTAAATTGGGGATTCATGCAC
AAGCAGCTGTAATTTCCTCTTAGAAAAGGTACCAAGCATTTGAAAGACTCGGATGCTGGG
GTTAATATTTAGGCCTATTACAATAGAGACTTGTTTTCAAACAGTTACTATTTTCCTAGG
GTTTTAGCTGTTAACTCACTAGTTTGCTGCTGTTGAAATAACATATGCTATTTGACAAAT
GGATTTATTTTTCAAGATGTCCCAGTGATTTCCTCTTGTACAATGTATATACTTCAGGAT
GTATAGAAAGGAAAGCTACAAATGAGCCCTTATATATACCCGTTGAAAGGTAGGAACATG
TCCACTCTTGTTTGAAAGCTGATTGTGAGAATAACCTCCGTTAGGGAGTGTAACTTGAAG
TGTTAGTGCAGGCTACTGATTTAACACATTACCTACCTTCTTCGCCTCACCTCCCATTTT
GCCCCCCAGAGTATAACCTTTTTTCTCACTGTGCTAAAAAATGGAAAGTCTGCTGTAGAA
TGCATCTGATGAATTAGCTCTTCAAGTGGGTACCATTTTACATGTGACAGCAGAATTCAG
TTTTGAGTTGTGACCGAAGAAATTTAAACCCTCCATTTAAAAACAAACAAAGCAACCCTA
TGTTTCATGGGAATCTAACAGAAATATCCTGTAAGATTATTGTCATCATAAAAATCTGTC
CGCTTTGCCCAGAAAGCAGCCGATTGACTTATTTGCTGTTCATTTTCCATTTTCATATAC
AGTTTATGTGTACAGATAGAATACCCATGGAGACGAGTAGACACAGTTAAGCAGATAGGC
TGTGCCCAAGGAATGATGAAAGCTGAAGGTACCGATGTAAGTGTGTCTAGTGTGTATTTC
TCGTCTCCACACAAGTTCATGTTTAGTGCTTTGTTTATGCCCCTAGTGAAGCTGCAGACC
ATTGTCAGGCCCATTTTATAAATGGTTCGCCCATGGCGCAGCATTGTCGCGCGTCTTAGG
TCAGCAGCAGATTTCTCTGCTGTCAGCCACTCCGTCCTCCATCAGAGTAGTACCGCTTGA
AGTCGCACTCTCCTCTTACATTTAAGATAGTTGTTGCAAGAGTTGGGCTGAAGCAGCACC
TTCATAACGTGGTGAGATTTCTTTTTCCTTTTTGTGTGGGGCGGGGGGAGGGTCACCTGA
GAAAATCAGTGGTTTGCAGGGACTTTGGGAACCTAACGATAAATATTACATGTAATCTCT
GCACAGATTCATCCTTTGTATGTTCATTCAAATGGTTAAAATGGAATTTTCCTCAGCTTA
TCATCACTCCTGGCCACACTTTCCTTGCCTGTTCTGTGGCTGCGGCTACTTGCGAGTGAT
ACCTGCGTTCCTTTGACGATGTTCCGTAGGTCATATTTGTCAATTGCACAACTAGTCTTC
CTTTTTCTCAAGTTCAGTGAAGTCTCGCTGGACAGTAATGATAGCAATAGCTAACTAACA
TCTGCACAGCACCTTACAGTTTGCAAAGAACGTCCACATATTCTCGTTTTTTTCTTGCAT
AGTGAACCTGTTACAAGATGCCTCTTGACATCGATGCTAAAGTGTTACAGTCTTTTAAGT
CACTAGAGTCGCTGAATATGCTGTAGTCTTTTCTTGACCAGTGCCCTGACGGGGGCAGGT
TTTAGATGCGCCACCGTGAAAGCTGCGTGTAACCTGCAAAATGGGGGGCTTGAGTTCCTT
CGCCACTTGAATCAGATTTACTTTTGTAAGTGATGCTTTTCTAACCGTTATCTGGATGGG
TTTTGTATTCATTATATCCTAACCTGTAATTTGTATAACTTTACCATCTGTTGTCATTAA
AAAAAGTGTTTGTAATGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACTTTGGGGATCTTCTGCTGTTTGTAAAATATTAATGTCCAGTGTTGGATTATTTTGT
TTGATTTCAGACATTGGCTGAGTGTTTTTCTGCGAGTATTTAAATTGGGGATTCATGCAC
AAGCAGCTGTAATTTCCTCTTAGAAAAGGTACCAAGCATTTGAAAGACTCGGATGCTGGG
GTTAATATTTAGGCCTATTACAATAGAGACTTGTTTTCAAACAGTTACTATTTTCCTAGG
GTTTTAGCTGTTAACTCACTAGTTTGCTGCTGTTGAAATAACATATGCTATTTGACAAAT
GGATTTATTTTTCAAGATGTCCCAGTGATTTCCTCTTGTACAATGTATATACTTCAGGAT
GTATAGAAAGGAAAGCTACAAATGAGCCCTTATATATACCCGTTGAAAGGTAGGAACATG
TCCACTCTTGTTTGAAAGCTGATTGTGAGAATAACCTCCGTTAGGGAGTGTAACTTGAAG
TGTTAGTGCAGGCTACTGATTTAACACATTACCTACCTTCTTCGCCTCACCTCCCATTTT
GCCCCCCAGAGTATAACCTTTTTTCTCACTGTGCTAAAAAATGGAAAGTCTGCTGTAGAA
TGCATCTGATGAATTAGCTCTTCAAGTGGGTACCATTTTACATGTGACAGCAGAATTCAG
TTTTGAGTTGTGACCGAAGAAATTTAAACCCTCCATTTAAAAACAAACAAAGCAACCCTA
TGTTTCATGGGAATCTAACAGAAATATCCTGTAAGATTATTGTCATCATAAAAATCTGTC
CGCTTTGCCCAGAAAGCAGCCGATTGACTTATTTGCTGTTCATTTTCCATTTTCATATAC
AGTTTATGTGTACAGATAGAATACCCATGGAGACGAGTAGACACAGTTAAGCAGATAGGC
TGTGCCCAAGGAATGATGAAAGCTGAAGGTACCGATGTAAGTGTGTCTAGTGTGTATTTC
TCGTCTCCACACAAGTTCATGTTTAGTGCTTTGTTTATGCCCCTAGTGAAGCTGCAGACC
ATTGTCAGGCCCATTTTATAAATGGTTCGCCCATGGCGCAGCATTGTCGCGCGTCTTAGG
TCAGCAGCAGATTTCTCTGCTGTCAGCCACTCCGTCCTCCATCAGAGTAGTACCGCTTGA
AGTCGCACTCTCCTCTTACATTTAAGATAGTTGTTGCAAGAGTTGGGCTGAAGCAGCACC
TTCATAACGTGGTGAGATTTCTTTTTCCTTTTTGTGTGGGGCGGGGGGAGGGTCACCTGA
GAAAATCAGTGGTTTGCAGGGACTTTGGGAACCTAACGATAAATATTACATGTAATCTCT
GCACAGATTCATCCTTTGTATGTTCATTCAAATGGTTAAAATGGAATTTTCCTCAGCTTA
TCATCACTCCTGGCCACACTTTCCTTGCCTGTTCTGTGGCTGCGGCTACTTGCGAGTGAT
ACCTGCGTTCCTTTGACGATGTTCCGTAGGTCATATTTGTCAATTGCACAACTAGTCTTC
CTTTTTCTCAAGTTCAGTGAAGTCTCGCTGGACAGTAATGATAGCAATAGCTAACTAACA
TCTGCACAGCACCTTACAGTTTGCAAAGAACGTCCACATATTCTCGTTTTTTTCTTGCAT
AGTGAACCTGTTACAAGATGCCTCTTGACATCGATGCTAAAGTGTTACAGTCTTTTAAGT
CACTAGAGTCGCTGAATATGCTGTAGTCTTTTCTTGACCAGTGCCCTGACGGGGGCAGGT
TTTAGATGCGCCACCGTGAAAGCTGCGTGTAACCTGCAAAATGGGGGGCTTGAGTTCCTT
CGCCACTTGAATCAGATTTACTTTTGTAAGTGATGCTTTTCTAACCGTTATCTGGATGGG
TTTTGTATTCATTATATCCTAACCTGTAATTTGTATAACTTTACCATCTGTTGTCATTAA
AAAAAGTGTTTGTAATGCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1472-1630, - strand, RNAz p=0.936504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1472-1630, - strand, RNAz p=0.936504

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-1043, gnl|bosTau2|chrX (11556267-11555225)
               

               
               1-1043, gnl|Hg17|chrX (150246130-150247546)
               


               
               1078-1940, gnl|bosTau2|chrX (11554922-11554086)
               

               
               1078-1940, gnl|Hg17|chrX (150247565-150248404)
               

               
               1078-1940, gnl|Mm7|chrX (67210575-67211355)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1043, gnl|bosTau2|chrX (11556267-11555225)
               

               
               1-1043, gnl|Hg17|chrX (150246130-150247546)
               


               
               1078-1940, gnl|bosTau2|chrX (11554922-11554086)
               

               
               1078-1940, gnl|Hg17|chrX (150247565-150248404)
               

               
               1078-1940, gnl|Mm7|chrX (67210575-67211355)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               spc (0.453463)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               isp (0.300752)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.453463)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               isp (0.300752)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	1-1043, gnl\|bosTau2\|chrX (11556267-11555225)
	1-1043, gnl\|Hg17\|chrX (150246130-150247546)

	1078-1940, gnl\|bosTau2\|chrX (11554922-11554086)
	1078-1940, gnl\|Hg17\|chrX (150247565-150248404)
	1078-1940, gnl\|Mm7\|chrX (67210575-67211355)

	spc (0.453463)
	sto (0.359648)
	gul (0.355177)
	isp (0.300752)
	ova (0.258264)
	cbe (0.239234)
	ece (0.229305)
	fbs (0.175346)
	sin (0.174948)
	fhi (0.169578)
	mga (0.160205)
	fat (0.147427)
	ski (0.146735)
	pty (0.142714)
	nca (0.136874)
	ste (0.135208)
	ute (0.132784)
	tra (0.123092)
	ecc (0.115035)