Non-Coding RNA Search

Ss1.1-rova034_f15.5

Sequence:


               
               AGTTCTGTAGCCCCAGGGAGGGGCAGAAGATCCCCTCATCTCAGAGAAGCAAGACTGATG
CTAGCTTGCTAGTAAGAGATGCACATGAAGGGGAGCAAGGAGCCTGAGAGAGCAGCAAGA
GGGCAACAGCAAAATACAGGGGGAATTGGTAAGAAAGGGGGAGCCAGGGCTTTATACAAG
TCTCAAGAAAATATCCAGTAGTTTCAGGTAAATAAGCATTCAAAATCTACCCAGCGACAG
CTCCTGCGCACCACGGCCAGGTGCCTGTCTCCAAAGACCTGCATTAAAGACATACTGCTT
CTTACCGAAACAAATATCTCCTGCGTTCTCCTTTTGTGGACATCAATTTGATGTGCTAAA
AATAAAGAGGTCTATCTTCTAGCTCGTGAAATAGCGTAATCTTGTTCAGAGGAAGCCAGA
TTTCCTATGGCGTTTCTTCTCTACTCAGAAGCATCTGTCCTCTTCCCCTTCGTAAAATGG
ATGGCTGGCACCCCCGAGTTTACTAGTAGAGACTCCGACCTTGACTCGCGGGGAGTTTAG
AACCACGGTGGAATAAAGAAATGTACATCCGGGCTCTTCTGTTTTTTGTTTTTATTTCAT
ATTAAACCAAACTTCTTTACCATGTTGGTTGAGTCTAAATGTTAGAGATGGGGCTGTGCT
ACCCTCTTGACAGCTCGGCCAACAGCCTCTGGTTGGGTTCCAAAAGGTTTGCTACTCTTC
CAAGACAAGGAAAGCTCTGACTTTGCATTTCTCTGATGGATGACAATGGAGATGAAGAAG
GCTCCATGTGCCTGAAGACATGGAGATGAATGTTCTTTTCTTAATTTAAACTGTCCTCTC
CTAGCTGCTGCGCCGATTGTCAGCCATCACATAATAACTTACTAAATGCTTGCTAAGTGC
CAGACACTGTGTTGAATGCTTTACAGGTTTCATTTAATCATCCAACAACCCTACTGTTTT
TATTCCCAATTTACAGATGAGGAGACTGGACTTACAAAAATATATAGTTCTTTAATGTAC
GAAAATATTCTGACCTTTATTCATAATAAAAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCTGTAGCCCCAGGGAGGGGCAGAAGATCCCCTCATCTCAGAGAAGCAAGACTGATG
CTAGCTTGCTAGTAAGAGATGCACATGAAGGGGAGCAAGGAGCCTGAGAGAGCAGCAAGA
GGGCAACAGCAAAATACAGGGGGAATTGGTAAGAAAGGGGGAGCCAGGGCTTTATACAAG
TCTCAAGAAAATATCCAGTAGTTTCAGGTAAATAAGCATTCAAAATCTACCCAGCGACAG
CTCCTGCGCACCACGGCCAGGTGCCTGTCTCCAAAGACCTGCATTAAAGACATACTGCTT
CTTACCGAAACAAATATCTCCTGCGTTCTCCTTTTGTGGACATCAATTTGATGTGCTAAA
AATAAAGAGGTCTATCTTCTAGCTCGTGAAATAGCGTAATCTTGTTCAGAGGAAGCCAGA
TTTCCTATGGCGTTTCTTCTCTACTCAGAAGCATCTGTCCTCTTCCCCTTCGTAAAATGG
ATGGCTGGCACCCCCGAGTTTACTAGTAGAGACTCCGACCTTGACTCGCGGGGAGTTTAG
AACCACGGTGGAATAAAGAAATGTACATCCGGGCTCTTCTGTTTTTTGTTTTTATTTCAT
ATTAAACCAAACTTCTTTACCATGTTGGTTGAGTCTAAATGTTAGAGATGGGGCTGTGCT
ACCCTCTTGACAGCTCGGCCAACAGCCTCTGGTTGGGTTCCAAAAGGTTTGCTACTCTTC
CAAGACAAGGAAAGCTCTGACTTTGCATTTCTCTGATGGATGACAATGGAGATGAAGAAG
GCTCCATGTGCCTGAAGACATGGAGATGAATGTTCTTTTCTTAATTTAAACTGTCCTCTC
CTAGCTGCTGCGCCGATTGTCAGCCATCACATAATAACTTACTAAATGCTTGCTAAGTGC
CAGACACTGTGTTGAATGCTTTACAGGTTTCATTTAATCATCCAACAACCCTACTGTTTT
TATTCCCAATTTACAGATGAGGAGACTGGACTTACAAAAATATATAGTTCTTTAATGTAC
GAAAATATTCTGACCTTTATTCATAATAAAAAGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-114, + strand, RNAz p=0.920117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, + strand, RNAz p=0.920117

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-998, gnl|bosTau2|chr10 (61033837-61034874)
               

               
               1-998, gnl|Hg17|chr14 (74036774-74035781)
               

               
               1-998, gnl|Mm7|chr12 (82783996-82783087)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-998, gnl|bosTau2|chr10 (61033837-61034874)
               

               
               1-998, gnl|Hg17|chr14 (74036774-74035781)
               

               
               1-998, gnl|Mm7|chr12 (82783996-82783087)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tra (0.246184)
               

               
               aor (0.195274)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

	1-998, gnl\|bosTau2\|chr10 (61033837-61034874)
	1-998, gnl\|Hg17\|chr14 (74036774-74035781)
	1-998, gnl\|Mm7\|chr12 (82783996-82783087)

	tra (0.246184)
	aor (0.195274)
	hlv (0.139256)
	ova (0.129132)
	sug (0.127291)
	nbm (0.0993246)