Non-Coding RNA Search

Ss1.1-rova036_e9.5

Sequence:


               
               CGGGAAGGGGTGTGCTTCAGACTCTTCAATAGTAGGAATAAATGGGTGCTTGGTAGAAAT
CTAGATCAACAGTTCTTTATATGGGAGCTTGGGCCCCGAAGAATTCAGTGGTCGGGTTTC
ATGGAGTATATGGGAAGTACATGCGGTGTTTTGATTTTAAATGCATTTTCTTTGGGAGAA
ACTCCCCCAAACTATGTGTCTTTTTTAAAAAAATAAGTCACTGTATGGATGGCTCTGAAA
TGTCCTCCCATTGTCATTGCAGTTCACATTCCTTCACAGTCCATACCTTTTCCTGCCAAT
GCTCAGCTCCTACAGTGTAATGGTCCACAGCTGCCTTTGTGACCTTGTGCCATTTTGAGA
TATGAGTGATGTAAAAATGTACTGAGCCCTTGAAGAGCTTCAGTCCCTAAAGTTTCTTTT
ACTGTTTTTATTAAGTTCCTATGTATAGGACAATAAACTGTGCCCTAGAACAGAGAAACT
CGCTTGAGAGAAGGAGATTTTAGCCCAGAAGAAAATTTTCAATATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAAGGGGTGTGCTTCAGACTCTTCAATAGTAGGAATAAATGGGTGCTTGGTAGAAAT
CTAGATCAACAGTTCTTTATATGGGAGCTTGGGCCCCGAAGAATTCAGTGGTCGGGTTTC
ATGGAGTATATGGGAAGTACATGCGGTGTTTTGATTTTAAATGCATTTTCTTTGGGAGAA
ACTCCCCCAAACTATGTGTCTTTTTTAAAAAAATAAGTCACTGTATGGATGGCTCTGAAA
TGTCCTCCCATTGTCATTGCAGTTCACATTCCTTCACAGTCCATACCTTTTCCTGCCAAT
GCTCAGCTCCTACAGTGTAATGGTCCACAGCTGCCTTTGTGACCTTGTGCCATTTTGAGA
TATGAGTGATGTAAAAATGTACTGAGCCCTTGAAGAGCTTCAGTCCCTAAAGTTTCTTTT
ACTGTTTTTATTAAGTTCCTATGTATAGGACAATAAACTGTGCCCTAGAACAGAGAAACT
CGCTTGAGAGAAGGAGATTTTAGCCCAGAAGAAAATTTTCAATATGTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               190-528, gnl|bosTau2|chr13 (11098954-11099299)
               

               
               190-528, gnl|Hg17|chr16 (68927874-68928821)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-528, gnl|bosTau2|chr13 (11098954-11099299)
               

               
               190-528, gnl|Hg17|chr16 (68927874-68928821)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	190-528, gnl\|bosTau2\|chr13 (11098954-11099299)
	190-528, gnl\|Hg17\|chr16 (68927874-68928821)