Non-Coding RNA Search

Ss1.1-rova037_h21.5

Sequence:


               
               CTGAAAGCCAAATTTGGAACTGAGAAATGTGAACAGGAGGAAGAGAAAGACGATCTTGAA
AGGTTTGTGAGTTGCCTTTTGGAGCAACCTGAGGTGTTAGTCGCTGGTGCAGGAAGAGGA
CACGCTGGCAGAATCATTCACAAGCTGTTTGTGAATGCACAGAGGGCTGCAGCCATGGCT
CCACCGGAGGAGGAATTGAAGAGAATGGGCTCCCCGGAAGAGAGGAGGCAGAACTTGGCA
TCAGACTTCCCACCCCCTGCCGGCCGGGAGCTCATTTTGCGCACGACCGTGCCCCGCCCT
GCCCCCTATTCCCGAGCTTTGCCTCAGCGCATGTACAGTGTTCTCACCAAGGAGGATTTC
AGACTTGCAGGTGCCTTTTCATCAGATACCTCCTTCTTCTAATTCTCCTAGAGTCACGTC
ATTTGTGGTTTCAGAGACAGTGCTGACCCCTTCTGTGTGAAGCAGGTTGTGCCAGTCAGA
ACTAGGAGGCCATGAAGCGGACCTGCCCAGTTCAGTGATCAAGAATCATACCAGCATCCG
AGAGACTTTCCAGTGGGCTCTGTTGTGTCTTGGTGGGGGCAGAGGAAATGGGCCTCAGCT
CTTGAATGGCTTCTTCCCCCAGGAGATGGCCCTTGTTTCGGGGGAGGGGAAGACTGAAAC
AGCAGCAGTTCTCAATACTCCAGTGGGACTGTGTTCATTCGTCTTTTCTGTGACTATCCC
TTAGGCTCTTGGCTGGCATTCATAGTCCCTGTAAACACTTATTATATTTATTAGTATCAA
ATATGCAAAGTAGAGTACCTGTTAACTCAGATTTCTGGATATTTTGGTGGTAGCTTCTAT
TCCCAGAATCTGTGTTTTTAAAATGCTAAATGATGTTCTGTTGATCCCGTCACCTGGTGG
CCGTCTTTATTGTACTATTCAACTTTTGATGAGCACTTTGGATATTCTAGGAGAAAGCCT
GGAATTTCACATAGTCTGTATGTTTTTCCATGTCACTGTGACCTAAATGTATTCTTTCTG
ATAAAACCTATATATTAAATGTCACTGCAGATTAGTTTAACATCTCTTGTAAGATTTGTT
TCTCTGCCTTGTGTTGTCCCAGCTGCCTTGTGAGAGGCACCTGCAGAATGTCGTTCTCTT
CCTTGCTGTACAGCATGCATTCCTTTTTTGGTGGTTGCTGGCTGGAGACTGTGTCTAATG
AAGTAGAGATCAGCACATGCTAAAACTATGGCCTCCATACATGGAGACTGTCATGCAGTC
AGTATGATTTGGTATATGTGCTAATGTTATGAGTAGAGGATTACTTCAGTGAACTACTGC
TTTTGTATTTCAGTTAAAATGAAAACAGTTGATGGGGATATGTAGTGCCCAGCCTAAGGA
TAACAGCAGCGTATTTCTAGTTACATGATCATCAAGATTTATCAAGTCTGTGTTGCTGTA
TAGCCTCTATTCAATAACCTTAAATCTATTTTTAGGCCTAAAATTCCCACTTTAATCCAG
AGTAAAAAATGGTTATACTGAAGCATAGATCTTGCCTGTGTGACTTTAAAGAACTAATAG
AACTGTGTAAACCCTGTTACATTATTTTCATTAAAAAATGTGAATGTATGTGTACCTATA
TATGTATATATATATGGATATGTGAAGTATGGGAGGCCCTGATTCCCTCCTGACCTTCAC
AGCACTTTCTTCTGAGATGCTGGACTTGAGTGCTGCAGGTCTGAGGACAGAGCGCTGTGC
GGGTAGAGGCCTTTCAAGGGCAGAGTTTGTCTACTCTCTAACGAGGCAGTTAATAAAAAG
AAACGGTTTTCAAAGAGAGGTTTTAAAAAGGTGTTGTGAATCTAATAAAAGGGAAAGTGT
CGCTTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAAGCCAAATTTGGAACTGAGAAATGTGAACAGGAGGAAGAGAAAGACGATCTTGAA
AGGTTTGTGAGTTGCCTTTTGGAGCAACCTGAGGTGTTAGTCGCTGGTGCAGGAAGAGGA
CACGCTGGCAGAATCATTCACAAGCTGTTTGTGAATGCACAGAGGGCTGCAGCCATGGCT
CCACCGGAGGAGGAATTGAAGAGAATGGGCTCCCCGGAAGAGAGGAGGCAGAACTTGGCA
TCAGACTTCCCACCCCCTGCCGGCCGGGAGCTCATTTTGCGCACGACCGTGCCCCGCCCT
GCCCCCTATTCCCGAGCTTTGCCTCAGCGCATGTACAGTGTTCTCACCAAGGAGGATTTC
AGACTTGCAGGTGCCTTTTCATCAGATACCTCCTTCTTCTAATTCTCCTAGAGTCACGTC
ATTTGTGGTTTCAGAGACAGTGCTGACCCCTTCTGTGTGAAGCAGGTTGTGCCAGTCAGA
ACTAGGAGGCCATGAAGCGGACCTGCCCAGTTCAGTGATCAAGAATCATACCAGCATCCG
AGAGACTTTCCAGTGGGCTCTGTTGTGTCTTGGTGGGGGCAGAGGAAATGGGCCTCAGCT
CTTGAATGGCTTCTTCCCCCAGGAGATGGCCCTTGTTTCGGGGGAGGGGAAGACTGAAAC
AGCAGCAGTTCTCAATACTCCAGTGGGACTGTGTTCATTCGTCTTTTCTGTGACTATCCC
TTAGGCTCTTGGCTGGCATTCATAGTCCCTGTAAACACTTATTATATTTATTAGTATCAA
ATATGCAAAGTAGAGTACCTGTTAACTCAGATTTCTGGATATTTTGGTGGTAGCTTCTAT
TCCCAGAATCTGTGTTTTTAAAATGCTAAATGATGTTCTGTTGATCCCGTCACCTGGTGG
CCGTCTTTATTGTACTATTCAACTTTTGATGAGCACTTTGGATATTCTAGGAGAAAGCCT
GGAATTTCACATAGTCTGTATGTTTTTCCATGTCACTGTGACCTAAATGTATTCTTTCTG
ATAAAACCTATATATTAAATGTCACTGCAGATTAGTTTAACATCTCTTGTAAGATTTGTT
TCTCTGCCTTGTGTTGTCCCAGCTGCCTTGTGAGAGGCACCTGCAGAATGTCGTTCTCTT
CCTTGCTGTACAGCATGCATTCCTTTTTTGGTGGTTGCTGGCTGGAGACTGTGTCTAATG
AAGTAGAGATCAGCACATGCTAAAACTATGGCCTCCATACATGGAGACTGTCATGCAGTC
AGTATGATTTGGTATATGTGCTAATGTTATGAGTAGAGGATTACTTCAGTGAACTACTGC
TTTTGTATTTCAGTTAAAATGAAAACAGTTGATGGGGATATGTAGTGCCCAGCCTAAGGA
TAACAGCAGCGTATTTCTAGTTACATGATCATCAAGATTTATCAAGTCTGTGTTGCTGTA
TAGCCTCTATTCAATAACCTTAAATCTATTTTTAGGCCTAAAATTCCCACTTTAATCCAG
AGTAAAAAATGGTTATACTGAAGCATAGATCTTGCCTGTGTGACTTTAAAGAACTAATAG
AACTGTGTAAACCCTGTTACATTATTTTCATTAAAAAATGTGAATGTATGTGTACCTATA
TATGTATATATATATGGATATGTGAAGTATGGGAGGCCCTGATTCCCTCCTGACCTTCAC
AGCACTTTCTTCTGAGATGCTGGACTTGAGTGCTGCAGGTCTGAGGACAGAGCGCTGTGC
GGGTAGAGGCCTTTCAAGGGCAGAGTTTGTCTACTCTCTAACGAGGCAGTTAATAAAAAG
AAACGGTTTTCAAAGAGAGGTTTTAAAAAGGTGTTGTGAATCTAATAAAAGGGAAAGTGT
CGCTTAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|52545537|emb|CAH56411.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545537|emb|CAH56411.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               165-1112, gnl|bosTau2|chr2 (38294118-38293161)
               

               
               165-1112, gnl|Hg17|chr2 (135759846-135760798)
               

               
               165-1112, gnl|Mm7|chr1 (127822225-127823019)
               


               
               1120-1630, gnl|bosTau2|chr13 (32799301-32798783)
               

               
               1120-1630, gnl|Hg17|chr2 (135760818-135761305)
               

               
               1120-1630, gnl|Mm7|chr1 (127823031-127823467)
               


               
               1638-1878, gnl|bosTau2|chr13 (32798576-32798317)
               

               
               1638-1878, gnl|Hg17|chr2 (135761345-135761589)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-1112, gnl|bosTau2|chr2 (38294118-38293161)
               

               
               165-1112, gnl|Hg17|chr2 (135759846-135760798)
               

               
               165-1112, gnl|Mm7|chr1 (127822225-127823019)
               


               
               1120-1630, gnl|bosTau2|chr13 (32799301-32798783)
               

               
               1120-1630, gnl|Hg17|chr2 (135760818-135761305)
               

               
               1120-1630, gnl|Mm7|chr1 (127823031-127823467)
               


               
               1638-1878, gnl|bosTau2|chr13 (32798576-32798317)
               

               
               1638-1878, gnl|Hg17|chr2 (135761345-135761589)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               cbe (0.956938)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	165-1112, gnl\|bosTau2\|chr2 (38294118-38293161)
	165-1112, gnl\|Hg17\|chr2 (135759846-135760798)
	165-1112, gnl\|Mm7\|chr1 (127822225-127823019)

	1120-1630, gnl\|bosTau2\|chr13 (32799301-32798783)
	1120-1630, gnl\|Hg17\|chr2 (135760818-135761305)
	1120-1630, gnl\|Mm7\|chr1 (127823031-127823467)

	1638-1878, gnl\|bosTau2\|chr13 (32798576-32798317)
	1638-1878, gnl\|Hg17\|chr2 (135761345-135761589)

	cbe (0.956938)
	fbs (0.350693)
	rec (0.346141)
	fat (0.294855)
	liv (0.292569)
	hyp (0.285673)
	fce (0.271592)
	ova (0.258264)
	hea (0.204499)
	cmu (0.186393)
	sto (0.179824)
	sin (0.174948)
	fhi (0.169578)
	cki (0.165235)
	lun (0.150489)
	spl (0.143184)
	lnt (0.142308)
	che (0.136314)
	lyg (0.133103)
	cov (0.132153)
	ret (0.128733)
	tra (0.123092)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)