Non-Coding RNA Search

Ss1.1-rova039_d5.5

Sequence:


               
               TTTTTTTTTTTGGAAGCGGTTCTCTTTATAAAGTGTTATTTTGATAGTTTGTGGATTCTA
AAAATATATATATATTTATATAAACACCGTATAAATCAAATATGTATTTAACGAAGCAAT
ATGTATTCATTCACTTTTAAGATTTTTTTTTTTTTGGTGTCAAAAGAATAGTAAAAGGTA
GCTGGAGTTGCTTCTATGGAGTTAGTTCTGCCACCGAGGTGGACTTTCACATGTGTTCAG
AAGCATCTCCTTCGCATTAAGCCTGACTCGTTCTGAGTACTACTTGCGGTGCTAAGGTGA
ACAAAGAATTTACATGTCCTGACACAGGCTCACAAGACCCTGTGTGAGGCCACCTTGCTT
CCTTACTGTGCCCTGCCCCAAATGTATAGTGCCTTGTTTTATGTACAGTTTCTATACAGA
AAAGTTGGCTCTGCATTTTTTGACGATGGTTTGAAACATTACCATTTTACTCTAAAATAG
TAGAAATTAAAAAAAAAAAAAAAAACCTCAATTTCTCATACCTGTTGTACACATGAAACA
TGTCATTTGGCGCTGGAGGACTCCAAAATAAAAGCTTCAGAATAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTGGAAGCGGTTCTCTTTATAAAGTGTTATTTTGATAGTTTGTGGATTCTA
AAAATATATATATATTTATATAAACACCGTATAAATCAAATATGTATTTAACGAAGCAAT
ATGTATTCATTCACTTTTAAGATTTTTTTTTTTTTGGTGTCAAAAGAATAGTAAAAGGTA
GCTGGAGTTGCTTCTATGGAGTTAGTTCTGCCACCGAGGTGGACTTTCACATGTGTTCAG
AAGCATCTCCTTCGCATTAAGCCTGACTCGTTCTGAGTACTACTTGCGGTGCTAAGGTGA
ACAAAGAATTTACATGTCCTGACACAGGCTCACAAGACCCTGTGTGAGGCCACCTTGCTT
CCTTACTGTGCCCTGCCCCAAATGTATAGTGCCTTGTTTTATGTACAGTTTCTATACAGA
AAAGTTGGCTCTGCATTTTTTGACGATGGTTTGAAACATTACCATTTTACTCTAAAATAG
TAGAAATTAAAAAAAAAAAAAAAAACCTCAATTTCTCATACCTGTTGTACACATGAAACA
TGTCATTTGGCGCTGGAGGACTCCAAAATAAAAGCTTCAGAATAAACA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               6-306, gnl|bosTau2|chr13 (21123841-21124134)
               

               
               6-306, gnl|Hg17|chr10 (29786866-29786550)
               

               
               6-306, gnl|Mm7|chr18 (5284662-5284948)
               


               
               322-588, gnl|bosTau2|chr13 (21124129-21124399)
               

               
               322-588, gnl|Hg17|chr10 (29786576-29786298)
               

               
               322-588, gnl|Mm7|chr18 (5284943-5285215)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-306, gnl|bosTau2|chr13 (21123841-21124134)
               

               
               6-306, gnl|Hg17|chr10 (29786866-29786550)
               

               
               6-306, gnl|Mm7|chr18 (5284662-5284948)
               


               
               322-588, gnl|bosTau2|chr13 (21124129-21124399)
               

               
               322-588, gnl|Hg17|chr10 (29786576-29786298)
               

               
               322-588, gnl|Mm7|chr18 (5284943-5285215)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               vin (0.665115)
               

               
               gul (0.532765)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               gul (0.532765)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

	6-306, gnl\|bosTau2\|chr13 (21123841-21124134)
	6-306, gnl\|Hg17\|chr10 (29786866-29786550)
	6-306, gnl\|Mm7\|chr18 (5284662-5284948)

	322-588, gnl\|bosTau2\|chr13 (21124129-21124399)
	322-588, gnl\|Hg17\|chr10 (29786576-29786298)
	322-588, gnl\|Mm7\|chr18 (5284943-5285215)

	vin (0.665115)
	gul (0.532765)
	sme (0.305437)
	ssp (0.271039)
	mas (0.210305)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	bfe (0.149858)
	ski (0.146735)
	ova (0.129132)
	eru (0.120048)