Non-Coding RNA Search

Ss1.1-rova039_e2.5

Sequence:


               
               AAAAACATGAAAAAAACAAAGCAGAATTAAAAGCAATGCAGAACATAGAGCTGTGTGATG
AACAATAAAGAGGAAGAAGAAAGACGAAGAAAAATAGAGGCTAAAGAACAATTGCTAGCC
ATCCTAAAAGCAGACCAGATTTTCTGGGAGCATGAAAAGGAGAAAAAACGGAAAGCTGAC
AAAGAACGTAGAGAAGTTCAAGATGCCCATATTCAGCAAATGGCCAAAAATAAGTTTAAA
GTAAAGCAAGCAAAACAAGCAGAATTAGAGGACTGCAGACTTACTGAAGCTCTCATTGCT
GAAAAGGAGAAGGAATTTCAGGATTATGCCAGAGAAGTAATTGAACTCGAGTCTAAATCA
ACAAATAAATATATGCATCCTCTTGTAAAAGCTGTACAGGAAGGACCCGGAGGTGGTCAT
GGACCAGTTTTTGTGGACAGAGGTGGATTAAGACCCAGCTATCAGGTCAATGATATCACT
GGAGTGCAGCTCCCTTTTTATAACTCTCAGGGATCAAAATATAATAATTTTCAAAAGTCA
AAGGGAAGGCTAGGTTTTACATGGTAGAAAAAGTTTATTTTTAAGATTAAGAAGACTAAG
TTGTAGCTAATATTCAGCTACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAACATGAAAAAAACAAAGCAGAATTAAAAGCAATGCAGAACATAGAGCTGTGTGATG
AACAATAAAGAGGAAGAAGAAAGACGAAGAAAAATAGAGGCTAAAGAACAATTGCTAGCC
ATCCTAAAAGCAGACCAGATTTTCTGGGAGCATGAAAAGGAGAAAAAACGGAAAGCTGAC
AAAGAACGTAGAGAAGTTCAAGATGCCCATATTCAGCAAATGGCCAAAAATAAGTTTAAA
GTAAAGCAAGCAAAACAAGCAGAATTAGAGGACTGCAGACTTACTGAAGCTCTCATTGCT
GAAAAGGAGAAGGAATTTCAGGATTATGCCAGAGAAGTAATTGAACTCGAGTCTAAATCA
ACAAATAAATATATGCATCCTCTTGTAAAAGCTGTACAGGAAGGACCCGGAGGTGGTCAT
GGACCAGTTTTTGTGGACAGAGGTGGATTAAGACCCAGCTATCAGGTCAATGATATCACT
GGAGTGCAGCTCCCTTTTTATAACTCTCAGGGATCAAAATATAATAATTTTCAAAAGTCA
AAGGGAAGGCTAGGTTTTACATGGTAGAAAAAGTTTATTTTTAAGATTAAGAAGACTAAG
TTGTAGCTAATATTCAGCTACAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34189879|gb|AAH15980.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34189879|gb|AAH15980.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               382-501, + strand, RNAz p=0.606188

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               382-501, + strand, RNAz p=0.606188

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               222-622, gnl|bosTau2|chr2 (18930458-18930058)
               

               
               222-622, gnl|Hg17|chr2 (170328200-170327804)
               

               
               222-622, gnl|Mm7|chr2 (69689015-69688625)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-622, gnl|bosTau2|chr2 (18930458-18930058)
               

               
               222-622, gnl|Hg17|chr2 (170328200-170327804)
               

               
               222-622, gnl|Mm7|chr2 (69689015-69688625)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               ova (0.129132)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               ova (0.129132)

	222-622, gnl\|bosTau2\|chr2 (18930458-18930058)
	222-622, gnl\|Hg17\|chr2 (170328200-170327804)
	222-622, gnl\|Mm7\|chr2 (69689015-69688625)