Ss1.1-rova039_k12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAACATGGCGGTCGGCTGGGACCGTAACACAAGCATGACTATATGAAAGAAGAAGAAGA AGGTTTTCCTGAAGATGAGGCGACTGAATCGGAAGAAAACCTTAAGTTTGGTGAAAGAGT TGGATGCCTTTCCAAAGGTTCCTGACAGCTATGTAGAGACTTCAGCCAGTGGGGGTACAG TTTCTCTAATAGCATTTACCACTATGGCTTTATTAACTATAATGGAATTTTCAGTATATC AAGATACATGGATGAAGTATGAATATGAAGTAGACAAGGATTTTTCTAGCAAATTGAGAA TCAATATAGATATTACTGTTGCCATGAAGTGTCAATATGTTGGAGCAGATGTATTGGATT TAGCAGAAACAATGGTTGCATCTACAGATGGTCTAGTTTATGAACCAGCAATATTTGATC TTTCACCACAGCAAAAAGAGTGGCAGAGGATGCTGCAGCGAATTCAGAGTAGACTGCAAG AAGAACATTCACTTCAAGATGTGATATTTAAAAGTGCTTTTAAAAGTGCATCAACAGCAC TTCCACCAAGGGAGGATGATTCATCACAGCCTCCAGATGCTTGCAGAATTCATGGTCATC TGTATGTCAATAAAGTAGCAGGGAATTTTCACATAACTGTGGGCAAGGCAATTCCACATC CCCGAGGTCATGCACACTTGGCAGCACTTGTCAACCATGACTCTTACAACTTTTCTCACA GAATAGATCATTTGTCTTTTGGAGAGCTTGTTCCAGGAATTATTAATCCTTTAGATGGAA CTGAAAAAATTGCATTAGATCACAACCAGATGTTCCAATATTTTATTACAGTTGTGCCAA CAAAACTACATACATATAAAATTTCAGCAGACACCCACCAGTTTTCTGTGACAGAAAGGG AACGTGTCATAAACCATGCTGCAGGCAGCCATGGAGTCTCTGGGATTTTTATGAAATATG ATCTCAGTTCTCTGATGGTGACAGTTACTGAGGAACATATGCCATTCTGGCAGTTTTTTG TAAGACTCTGTGGTATTGTTGGAGGAATCTTTTCAACAACAGGCATGCTACATGGAATTG GAAAATTTATAGTTGAAATAATTTACTGTCGTTTCAGACTTGGAGCCTACAAACCCGTCA ATTCTGTTCCCTATGAAGATGGCCACACAGACAACCACTTACCTCTTTTAGAAAATAACA CACATTAGCGCCTCCCAAGTAAAGGAGAAAAACTTTTTGCCTGAGACATAAAACCTTTTT TAATAATAAAATATTGTGCAATATAGTCAAAGAAAACATGAATTAAGAAGCAGGATTCTC ACATAGAGAAAAAAAGAAAAAAAACCCAAACTGAATCCTATACTTGTCGTGTCTGTTACA AATGTCCCAGAAGAAATTATGCAGCTAATCTAATCAGTGAATAAGCCCAACTGGAGTATT GCTTTGAAGATGACCCCTTCTGATATTTTCATAGCAAATGGGCTGTATCGAAATCAGACC TTCTTGATGACAAAGAGCCTGAAGGAAAGAAGCAAACCACATTTAAAGAAAAAGGCATTG ATAAGTGCAAATGTTTGCATCTCTTTGTTTTTAAAAGATATGGTGTCAGAATAAAATATG TAAAACATAAAAAAAACTAGTCTAAACTTTAAAAAAGTGTGGTCAGGTCACATTTTTAAT AAAGGAAAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAACATGGCGGTCGGCTGGGACCGTAACACAAGCATGACTATATGAAAGAAGAAGAAGA AGGTTTTCCTGAAGATGAGGCGACTGAATCGGAAGAAAACCTTAAGTTTGGTGAAAGAGT TGGATGCCTTTCCAAAGGTTCCTGACAGCTATGTAGAGACTTCAGCCAGTGGGGGTACAG TTTCTCTAATAGCATTTACCACTATGGCTTTATTAACTATAATGGAATTTTCAGTATATC AAGATACATGGATGAAGTATGAATATGAAGTAGACAAGGATTTTTCTAGCAAATTGAGAA TCAATATAGATATTACTGTTGCCATGAAGTGTCAATATGTTGGAGCAGATGTATTGGATT TAGCAGAAACAATGGTTGCATCTACAGATGGTCTAGTTTATGAACCAGCAATATTTGATC TTTCACCACAGCAAAAAGAGTGGCAGAGGATGCTGCAGCGAATTCAGAGTAGACTGCAAG AAGAACATTCACTTCAAGATGTGATATTTAAAAGTGCTTTTAAAAGTGCATCAACAGCAC TTCCACCAAGGGAGGATGATTCATCACAGCCTCCAGATGCTTGCAGAATTCATGGTCATC TGTATGTCAATAAAGTAGCAGGGAATTTTCACATAACTGTGGGCAAGGCAATTCCACATC CCCGAGGTCATGCACACTTGGCAGCACTTGTCAACCATGACTCTTACAACTTTTCTCACA GAATAGATCATTTGTCTTTTGGAGAGCTTGTTCCAGGAATTATTAATCCTTTAGATGGAA CTGAAAAAATTGCATTAGATCACAACCAGATGTTCCAATATTTTATTACAGTTGTGCCAA CAAAACTACATACATATAAAATTTCAGCAGACACCCACCAGTTTTCTGTGACAGAAAGGG AACGTGTCATAAACCATGCTGCAGGCAGCCATGGAGTCTCTGGGATTTTTATGAAATATG ATCTCAGTTCTCTGATGGTGACAGTTACTGAGGAACATATGCCATTCTGGCAGTTTTTTG TAAGACTCTGTGGTATTGTTGGAGGAATCTTTTCAACAACAGGCATGCTACATGGAATTG GAAAATTTATAGTTGAAATAATTTACTGTCGTTTCAGACTTGGAGCCTACAAACCCGTCA ATTCTGTTCCCTATGAAGATGGCCACACAGACAACCACTTACCTCTTTTAGAAAATAACA CACATTAGCGCCTCCCAAGTAAAGGAGAAAAACTTTTTGCCTGAGACATAAAACCTTTTT TAATAATAAAATATTGTGCAATATAGTCAAAGAAAACATGAATTAAGAAGCAGGATTCTC ACATAGAGAAAAAAAGAAAAAAAACCCAAACTGAATCCTATACTTGTCGTGTCTGTTACA AATGTCCCAGAAGAAATTATGCAGCTAATCTAATCAGTGAATAAGCCCAACTGGAGTATT GCTTTGAAGATGACCCCTTCTGATATTTTCATAGCAAATGGGCTGTATCGAAATCAGACC TTCTTGATGACAAAGAGCCTGAAGGAAAGAAGCAAACCACATTTAAAGAAAAAGGCATTG ATAAGTGCAAATGTTTGCATCTCTTTGTTTTTAAAAGATATGGTGTCAGAATAAAATATG TAAAACATAAAAAAAACTAGTCTAAACTTTAAAAAAGTGTGGTCAGGTCACATTTTTAAT AAAGGAAAAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 899-1017, + strand, RNAz p=0.873018 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 899-1017, + strand, RNAz p=0.873018 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 33-180, gnl|bosTau2|chr5 (49414101-49413957) | |
| 33-180, gnl|canFam2|chr27 (21638782-21638639) | |
| 33-180, gnl|danRer3|chr25 (10732788-10732936) | |
| 33-180, gnl|dasNov1|scaffold_44563 (474-328) | |
| 33-180, gnl|echTel1|scaffold_312336 (48545-48399) | |
| 33-180, gnl|fr1|chrUn (123304969-123305085) | |
| 33-180, gnl|galGal2|chr1 (8720893-8721039) | |
| 33-180, gnl|hg17|chr12 (29415719-29415862) | |
| 33-180, gnl|Hg17|chr12 (29415872-29415728) | |
| 33-180, gnl|loxAfr1|scaffold_31075 (6948-6802) | |
| 33-180, gnl|mm7|chr6 (148284844-148284986) | |
| 33-180, gnl|Mm7|chr6 (148284996-148284852) | |
| 33-180, gnl|monDom2|scaffold_71 (5912509-5912367) | |
| 33-180, gnl|oryCun1|scaffold_71391 (1412-1279) | |
| 33-180, gnl|rheMac2|chr11 (29700483-29700626) | |
| 33-180, gnl|rn3|chr4 (186067286-186067428) | |
| 33-180, gnl|tetNig1|chr13 (4508758-4508648) | |
| 447-558, gnl|bosTau2|chr5 (49397908-49397797) | |
| 447-558, gnl|Hg17|chr12 (29401926-29401815) | |
| 447-558, gnl|Mm7|chr6 (148274420-148274309) | |
| 899-1063, gnl|bosTau2|chr5 (49385583-49385418) | |
| 899-1063, gnl|canFam2|chr27 (21665673-21665552) | |
| 899-1063, gnl|danRer3|chr25 (10724573-10724694) | |
| 899-1063, gnl|echTel1|scaffold_312336 (75179-75058) | |
| 899-1063, gnl|fr1|chrUn (123303106-123303227) | |
| 899-1063, gnl|galGal2|chr1 (8705373-8705493) | |
| 899-1063, gnl|hg17|chr12 (29387316-29387437) | |
| 899-1063, gnl|Hg17|chr12 (29387483-29387319) | |
| 899-1063, gnl|mm7|chr6 (148261361-148261482) | |
| 899-1063, gnl|Mm7|chr6 (148261528-148261364) | |
| 899-1063, gnl|monDom2|scaffold_71 (5978444-5978324) | |
| 899-1063, gnl|oryCun1|scaffold_71391 (2295-2178) | |
| 899-1063, gnl|panTro1|chrUn_random (55825209-55825330) | |
| 899-1063, gnl|rheMac2|chr11 (29672709-29672830) | |
| 899-1063, gnl|rn3|chr4 (186043959-186044080) | |
| 899-1063, gnl|tetNig1|chr13 (4510570-4510449) | |
| 899-1063, gnl|xenTro1|scaffold_1242 (65301-65420) | |
| 1146-1690, gnl|bosTau2|chr5 (49382484-49381933) | |
| 1146-1690, gnl|Hg17|chr12 (29385418-29384855) | |
| 1146-1690, gnl|Mm7|chr6 (148260058-148259533) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-180, gnl|bosTau2|chr5 (49414101-49413957) | |
| 33-180, gnl|canFam2|chr27 (21638782-21638639) | |
| 33-180, gnl|danRer3|chr25 (10732788-10732936) | |
| 33-180, gnl|dasNov1|scaffold_44563 (474-328) | |
| 33-180, gnl|echTel1|scaffold_312336 (48545-48399) | |
| 33-180, gnl|fr1|chrUn (123304969-123305085) | |
| 33-180, gnl|galGal2|chr1 (8720893-8721039) | |
| 33-180, gnl|hg17|chr12 (29415719-29415862) | |
| 33-180, gnl|Hg17|chr12 (29415872-29415728) | |
| 33-180, gnl|loxAfr1|scaffold_31075 (6948-6802) | |
| 33-180, gnl|mm7|chr6 (148284844-148284986) | |
| 33-180, gnl|Mm7|chr6 (148284996-148284852) | |
| 33-180, gnl|monDom2|scaffold_71 (5912509-5912367) | |
| 33-180, gnl|oryCun1|scaffold_71391 (1412-1279) | |
| 33-180, gnl|rheMac2|chr11 (29700483-29700626) | |
| 33-180, gnl|rn3|chr4 (186067286-186067428) | |
| 33-180, gnl|tetNig1|chr13 (4508758-4508648) | |
| 447-558, gnl|bosTau2|chr5 (49397908-49397797) | |
| 447-558, gnl|Hg17|chr12 (29401926-29401815) | |
| 447-558, gnl|Mm7|chr6 (148274420-148274309) | |
| 899-1063, gnl|bosTau2|chr5 (49385583-49385418) | |
| 899-1063, gnl|canFam2|chr27 (21665673-21665552) | |
| 899-1063, gnl|danRer3|chr25 (10724573-10724694) | |
| 899-1063, gnl|echTel1|scaffold_312336 (75179-75058) | |
| 899-1063, gnl|fr1|chrUn (123303106-123303227) | |
| 899-1063, gnl|galGal2|chr1 (8705373-8705493) | |
| 899-1063, gnl|hg17|chr12 (29387316-29387437) | |
| 899-1063, gnl|Hg17|chr12 (29387483-29387319) | |
| 899-1063, gnl|mm7|chr6 (148261361-148261482) | |
| 899-1063, gnl|Mm7|chr6 (148261528-148261364) | |
| 899-1063, gnl|monDom2|scaffold_71 (5978444-5978324) | |
| 899-1063, gnl|oryCun1|scaffold_71391 (2295-2178) | |
| 899-1063, gnl|panTro1|chrUn_random (55825209-55825330) | |
| 899-1063, gnl|rheMac2|chr11 (29672709-29672830) | |
| 899-1063, gnl|rn3|chr4 (186043959-186044080) | |
| 899-1063, gnl|tetNig1|chr13 (4510570-4510449) | |
| 899-1063, gnl|xenTro1|scaffold_1242 (65301-65420) | |
| 1146-1690, gnl|bosTau2|chr5 (49382484-49381933) | |
| 1146-1690, gnl|Hg17|chr12 (29385418-29384855) | |
| 1146-1690, gnl|Mm7|chr6 (148260058-148259533) |
| Expressed library(ies): 42 entry(ies) | More info |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
| lyg (0.665513) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| spl (0.429553) | |
| tra (0.369276) | |
| vin (0.332557) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| lin (0.291206) | |
| lnt (0.284616) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| pla (0.267344) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| sug (0.254582) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fco (0.157208) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| pty (0.142714) | |
| thg (0.126791) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.665513) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| spl (0.429553) | |
| tra (0.369276) | |
| vin (0.332557) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| lin (0.291206) | |
| lnt (0.284616) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| pla (0.267344) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| sug (0.254582) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fco (0.157208) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| pty (0.142714) | |
| thg (0.126791) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |