Non-Coding RNA Search

Ss1.1-rpan003_g24.5

Sequence:


               
               CCACCACCCCCACCACCCCTGCCCCCACCAGTGTCTGCTCGTTTTCTGTCTGTGGAGCCA
AGATGCCGCTCACCTGCTGGGGCTGTGCTTGGTCCGAGGGTGTTTGCCCGGCCACCAGCA
GCAGTGCTGCAGGGTCACTGGGCGGAGGGGACTCTATTTGGGTAGGAACGTGGGCGGGGG
TCTAGGAAAGGGGGCGGGGCCATCCTGGCAAATGTCTTTCCTTTTCCGTGATTATAGAGA
ACCAGGATTTTTATTATTGTTATTATAATTATAATTATTATTATTATTGAGAAGAGGAAA
CCTAGCACTGGCAGAGAGGCCCTTCTCTGCTCTCATCTTTCAGGTTTTACTCCTGGCACT
GGCTGTGATACTTGGAATTTTGAGGTTCAGGGAACTCAGAGAATTTGGTATAACACAGTG
TATTGGGAGAAAGGGAACATTTCTGGGTGACAGACTGATCACTGAGCTGACATGTTTCCA
GAAATGGTGGGTGGATTTGATTGGAAAAGTCGGGCTCCTGCAGCGATGGTGGGAAAGAAA
GTCTTCATGGCTGCACTTCTTTTAACAGTTCTCTCCCCTGAAAGGACAGATTGTAGTAAA
GAAATGAAAATAATTTGAAGTGATAAGTCAAAAGATAGAATTAGAAAATGTTGAATTTCC
AAGTGATTCAGAGGTGTGGCTCTTCCAGCGTCTTTTTCTCCCGAGGTCGTCCCTCCCACC
TCCTGCTTTGCAATTGCAGTTTAATGAACACTCTGTGAAACAAATGCTAAATATGAACAC
ACGCATATAAAACTATGCTCTGAGGATAAAGCAGCTTATAATTTGTGGGAAAAGGATTAA
ATATTTCTGTTTTCTGAAAAGAGTTATTTTGTATTTTGTTTTCTATTAAAATGTATTTAG
TTTCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCACCCCCACCACCCCTGCCCCCACCAGTGTCTGCTCGTTTTCTGTCTGTGGAGCCA
AGATGCCGCTCACCTGCTGGGGCTGTGCTTGGTCCGAGGGTGTTTGCCCGGCCACCAGCA
GCAGTGCTGCAGGGTCACTGGGCGGAGGGGACTCTATTTGGGTAGGAACGTGGGCGGGGG
TCTAGGAAAGGGGGCGGGGCCATCCTGGCAAATGTCTTTCCTTTTCCGTGATTATAGAGA
ACCAGGATTTTTATTATTGTTATTATAATTATAATTATTATTATTATTGAGAAGAGGAAA
CCTAGCACTGGCAGAGAGGCCCTTCTCTGCTCTCATCTTTCAGGTTTTACTCCTGGCACT
GGCTGTGATACTTGGAATTTTGAGGTTCAGGGAACTCAGAGAATTTGGTATAACACAGTG
TATTGGGAGAAAGGGAACATTTCTGGGTGACAGACTGATCACTGAGCTGACATGTTTCCA
GAAATGGTGGGTGGATTTGATTGGAAAAGTCGGGCTCCTGCAGCGATGGTGGGAAAGAAA
GTCTTCATGGCTGCACTTCTTTTAACAGTTCTCTCCCCTGAAAGGACAGATTGTAGTAAA
GAAATGAAAATAATTTGAAGTGATAAGTCAAAAGATAGAATTAGAAAATGTTGAATTTCC
AAGTGATTCAGAGGTGTGGCTCTTCCAGCGTCTTTTTCTCCCGAGGTCGTCCCTCCCACC
TCCTGCTTTGCAATTGCAGTTTAATGAACACTCTGTGAAACAAATGCTAAATATGAACAC
ACGCATATAAAACTATGCTCTGAGGATAAAGCAGCTTATAATTTGTGGGAAAAGGATTAA
ATATTTCTGTTTTCTGAAAAGAGTTATTTTGTATTTTGTTTTCTATTAAAATGTATTTAG
TTTCAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               256-367, - strand, RNAz p=0.919823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-367, - strand, RNAz p=0.919823

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               46-912, gnl|bosTau2|chr22 (11382132-11381262)
               

               
               46-912, gnl|Hg17|chr1 (226036486-226035595)
               


               
               281-911, gnl|bosTau2|chr21 (6629368-6628746)
               

               
               281-911, gnl|Hg17|chr1 (226036229-226035596)
               

               
               281-911, gnl|Mm7|chr8 (122584067-122583452)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-912, gnl|bosTau2|chr22 (11382132-11381262)
               

               
               46-912, gnl|Hg17|chr1 (226036486-226035595)
               


               
               281-911, gnl|bosTau2|chr21 (6629368-6628746)
               

               
               281-911, gnl|Hg17|chr1 (226036229-226035596)
               

               
               281-911, gnl|Mm7|chr8 (122584067-122583452)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               aor (0.390549)
               

               
               csk (0.281492)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               csk (0.281492)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)

	46-912, gnl\|bosTau2\|chr22 (11382132-11381262)
	46-912, gnl\|Hg17\|chr1 (226036486-226035595)

	281-911, gnl\|bosTau2\|chr21 (6629368-6628746)
	281-911, gnl\|Hg17\|chr1 (226036229-226035596)
	281-911, gnl\|Mm7\|chr8 (122584067-122583452)

	aor (0.390549)
	csk (0.281492)
	pgl (0.236967)
	pan (0.23596)
	mgp (0.230681)
	tes (0.207814)
	nlu (0.191681)
	fco (0.157208)
	liv (0.146284)
	spl (0.143184)
	pla (0.133672)
	ese (0.126502)
	bla (0.124347)
	nbm (0.0993246)