Non-Coding RNA Search

Ss1.1-rpan005_f11.5

Sequence:


               
               AAAATTTCTTGTTACTACAGGATAAAACAATGAAAAGGATCTTGTATTTTAAAATATATA
TATATATGTAATTTTATAAAAAGAAAACTTGTTTTTCATTCAAAAGTGTCATTTTTACTT
TGGTAAATTTTTCATAGGTCCTAAAAGAAAACTGTTTTGAGAAACTAAGTACCTTTTCCA
CATCCCTTTGCCTTCTCTTCTTGCCAAATTCTTCTACAAAAATAACACTTGATGCTGGGG
AAAAACAACAACAAAAAACAGAAAAAACCCTTTCCTACGTTAAGATCATCACATCAGGAA
CGACTTCTAAGAGAAGCCTACATTTCTCCACTCGTGTCAGTCTCAAGCATCCCACTCAGC
ACTGCAGATTTGCCATAGCCGCTTTCACCACAGAATTTTTATTAAAAAGAACATATCATG
GGAAAAAAAAAAAAAATCACACCTGGGTTTCTTAGAGCTGCTTCCCCCGGATTGCCGCTG
CTGTTTTAACGGCCATCCCTCTAGCAGCAATGGGATGTAGATGATTGAATGTTAAGAGGT
TGCAAGTGACAATCTGAAAATGTGCACTCGTGTGTAGTTTTCTTTTCTCTCTTTCAGAAG
TAGTTTCCAAAAAGACCATTACCTCTCCTGATCTGATTTGTCTAATTTACAGTTATAGGT
GAAAAAAAATGATGTAAAGAATTATCAGTGGATGCAGCTGCAACTCACAGTGAACTGTCC
CCTCCTATTCCCCATACTTCACCCTTCTTTCTTATTTTATAGTGTTGGATACACACGAAT
GGTGTTTTCTTTGTGCATTGAGGCAAGTCTATTTTTTAAACATTTAGGGAGGAGTACATT
AGTTTATGCTTCTTGTACAATTTTTTTTTCTGTTGTTTAGCTTTGTTGGATTATAAATTC
TTTGTGCATTCCTGAATTTGCCTTATTTCATGTAAAATTTATGTCATTTGGTTTTTGATA
AGTTTAAGGCATCAGTGATATTTCTTAACTACTTGTTACATATAGTTTTTCAAGTAATGA
CTGTGATGGTGACCAAGTAATGTGCACTTTTTATGGTAACTGTGGACATTGCTATGCTTT
TTTCTTCTAGTGTTTCTAGAATTACTGTTCCTTACAGTTATGTAAACAAAAAACAAACAA
AAAAAACTTTGGTGATACTGTTGGTGAACATAATGTGAAAATCTTATTGAAATATGAGTA
TTTTGAAAATACATAGATGCACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTTCTTGTTACTACAGGATAAAACAATGAAAAGGATCTTGTATTTTAAAATATATA
TATATATGTAATTTTATAAAAAGAAAACTTGTTTTTCATTCAAAAGTGTCATTTTTACTT
TGGTAAATTTTTCATAGGTCCTAAAAGAAAACTGTTTTGAGAAACTAAGTACCTTTTCCA
CATCCCTTTGCCTTCTCTTCTTGCCAAATTCTTCTACAAAAATAACACTTGATGCTGGGG
AAAAACAACAACAAAAAACAGAAAAAACCCTTTCCTACGTTAAGATCATCACATCAGGAA
CGACTTCTAAGAGAAGCCTACATTTCTCCACTCGTGTCAGTCTCAAGCATCCCACTCAGC
ACTGCAGATTTGCCATAGCCGCTTTCACCACAGAATTTTTATTAAAAAGAACATATCATG
GGAAAAAAAAAAAAAATCACACCTGGGTTTCTTAGAGCTGCTTCCCCCGGATTGCCGCTG
CTGTTTTAACGGCCATCCCTCTAGCAGCAATGGGATGTAGATGATTGAATGTTAAGAGGT
TGCAAGTGACAATCTGAAAATGTGCACTCGTGTGTAGTTTTCTTTTCTCTCTTTCAGAAG
TAGTTTCCAAAAAGACCATTACCTCTCCTGATCTGATTTGTCTAATTTACAGTTATAGGT
GAAAAAAAATGATGTAAAGAATTATCAGTGGATGCAGCTGCAACTCACAGTGAACTGTCC
CCTCCTATTCCCCATACTTCACCCTTCTTTCTTATTTTATAGTGTTGGATACACACGAAT
GGTGTTTTCTTTGTGCATTGAGGCAAGTCTATTTTTTAAACATTTAGGGAGGAGTACATT
AGTTTATGCTTCTTGTACAATTTTTTTTTCTGTTGTTTAGCTTTGTTGGATTATAAATTC
TTTGTGCATTCCTGAATTTGCCTTATTTCATGTAAAATTTATGTCATTTGGTTTTTGATA
AGTTTAAGGCATCAGTGATATTTCTTAACTACTTGTTACATATAGTTTTTCAAGTAATGA
CTGTGATGGTGACCAAGTAATGTGCACTTTTTATGGTAACTGTGGACATTGCTATGCTTT
TTTCTTCTAGTGTTTCTAGAATTACTGTTCCTTACAGTTATGTAAACAAAAAACAAACAA
AAAAAACTTTGGTGATACTGTTGGTGAACATAATGTGAAAATCTTATTGAAATATGAGTA
TTTTGAAAATACATAGATGCACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               995-1140, - strand, RNAz p=0.810516

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               995-1140, - strand, RNAz p=0.810516

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1224, gnl|bosTau2|chr24 (17378819-17380021)
               

               
               1-1224, gnl|Hg17|chr18 (29686383-29685181)
               

               
               1-1224, gnl|Mm7|chr18 (23071238-23070011)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1224, gnl|bosTau2|chr24 (17378819-17380021)
               

               
               1-1224, gnl|Hg17|chr18 (29686383-29685181)
               

               
               1-1224, gnl|Mm7|chr18 (23071238-23070011)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               fco (0.157208)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               fco (0.157208)

	1-1224, gnl\|bosTau2\|chr24 (17378819-17380021)
	1-1224, gnl\|Hg17\|chr18 (29686383-29685181)
	1-1224, gnl\|Mm7\|chr18 (23071238-23070011)