Ss1.1-rpan008_o18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGATGACAGCCGCTCACTGCGTGGACAGAGAGTTGACCTTCCGTGTGGTGGTTGGAGA GCACAACCTGAACCAGAACGATGGCACCGAGCAGTACGTGGGGGTGCAGAAGATCGTGGT GCATCCCTACTGGAACACCGACGACGTGGCTGCAGGCTATGACATCGCCCTGCTGCGCCT GGCCCAGAGTGTAACCCTCAACAGCTACGTCCAGCTGGGTGTTCTGCCAAGGGCGGGGAC CATCCTGGCTAACAACAGTCCCTGCTACATCACAGGCTGGGGCCTGACCAGGACCAATGG GCAGCTGGCCCAGACCCTGCAGCAGGCTTACCTGCCCACCGTGGACTACGCCATCTGCTC CAGCTCCTCGTACTGGGGCTCCACCGTGAAGAACAGCATGGTGTGCGCCGGAGGGGACGG AGTTCGCTCTGGATGTCAGGGTGATTCTGGGGGCCCCCTTCATTGCTTGGTGAATGGTCA GTATGCTGTCCACGGTGTAACCAGCTTCGTGTCCCGCCTGGGCTGTAATGTCACCAGGAA GCCCACAGTCTTCACCAGGGTCTCTGCTTACATCTCTTGGATAAATAACGTCATTGCCAG CAACTGAACATTTTCCGGAGTCCAACGGTCTTCCGAGGTGATTCTTAGATGCTCAGCAGG ACTTGAGGCCACCAAAGAAATTACATTCTAAGAGACTATTGAGTCAGATACAGAAAAGCA AATAAAACCGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGATGACAGCCGCTCACTGCGTGGACAGAGAGTTGACCTTCCGTGTGGTGGTTGGAGA GCACAACCTGAACCAGAACGATGGCACCGAGCAGTACGTGGGGGTGCAGAAGATCGTGGT GCATCCCTACTGGAACACCGACGACGTGGCTGCAGGCTATGACATCGCCCTGCTGCGCCT GGCCCAGAGTGTAACCCTCAACAGCTACGTCCAGCTGGGTGTTCTGCCAAGGGCGGGGAC CATCCTGGCTAACAACAGTCCCTGCTACATCACAGGCTGGGGCCTGACCAGGACCAATGG GCAGCTGGCCCAGACCCTGCAGCAGGCTTACCTGCCCACCGTGGACTACGCCATCTGCTC CAGCTCCTCGTACTGGGGCTCCACCGTGAAGAACAGCATGGTGTGCGCCGGAGGGGACGG AGTTCGCTCTGGATGTCAGGGTGATTCTGGGGGCCCCCTTCATTGCTTGGTGAATGGTCA GTATGCTGTCCACGGTGTAACCAGCTTCGTGTCCCGCCTGGGCTGTAATGTCACCAGGAA GCCCACAGTCTTCACCAGGGTCTCTGCTTACATCTCTTGGATAAATAACGTCATTGCCAG CAACTGAACATTTTCCGGAGTCCAACGGTCTTCCGAGGTGATTCTTAGATGCTCAGCAGG ACTTGAGGCCACCAAAGAAATTACATTCTAAGAGACTATTGAGTCAGATACAGAAAAGCA AATAAAACCGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 176-293, - strand, RNAz p=0.518833 | |
| 437-555, + strand, RNAz p=0.606957 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 176-293, - strand, RNAz p=0.518833 | |
| 437-555, + strand, RNAz p=0.606957 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 158-293, gnl|bosTau2|chr5 (20834793-20834928) | |
| 158-293, gnl|Hg17|chr12 (50021430-50021295) | |
| 158-293, gnl|Mm7|chr15 (100668267-100668132) | |
| 437-607, gnl|bosTau2|chr5 (20844609-20844779) | |
| 437-607, gnl|canFam2|chr27 (6561748-6561560) | |
| 437-607, gnl|danRer3|chr22 (7204816-7204637) | |
| 437-607, gnl|dasNov1|scaffold_189142 (3208-3020) | |
| 437-607, gnl|echTel1|scaffold_319451 (50527-50715) | |
| 437-607, gnl|fr1|chrUn (124357254-124357438) | |
| 437-607, gnl|galGal2|chrUn (57348712-57348502) | |
| 437-607, gnl|hg17|chr12 (50009700-50009888) | |
| 437-607, gnl|Hg17|chr12 (50009887-50009717) | |
| 437-607, gnl|loxAfr1|scaffold_22962 (31155-31337) | |
| 437-607, gnl|mm7|chr15 (100660539-100660722) | |
| 437-607, gnl|Mm7|chr15 (100660721-100660551) | |
| 437-607, gnl|oryCun1|scaffold_90078 (4419-4607) | |
| 437-607, gnl|panTro1|chr10 (51234177-51234365) | |
| 437-607, gnl|rheMac2|chr11 (48478550-48478738) | |
| 437-607, gnl|rn3|chr7 (139516609-139516792) | |
| 437-607, gnl|tetNig1|chr11 (7239502-7239664) | |
| 437-607, gnl|xenTro1|scaffold_1282 (141037-140823) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-293, gnl|bosTau2|chr5 (20834793-20834928) | |
| 158-293, gnl|Hg17|chr12 (50021430-50021295) | |
| 158-293, gnl|Mm7|chr15 (100668267-100668132) | |
| 437-607, gnl|bosTau2|chr5 (20844609-20844779) | |
| 437-607, gnl|canFam2|chr27 (6561748-6561560) | |
| 437-607, gnl|danRer3|chr22 (7204816-7204637) | |
| 437-607, gnl|dasNov1|scaffold_189142 (3208-3020) | |
| 437-607, gnl|echTel1|scaffold_319451 (50527-50715) | |
| 437-607, gnl|fr1|chrUn (124357254-124357438) | |
| 437-607, gnl|galGal2|chrUn (57348712-57348502) | |
| 437-607, gnl|hg17|chr12 (50009700-50009888) | |
| 437-607, gnl|Hg17|chr12 (50009887-50009717) | |
| 437-607, gnl|loxAfr1|scaffold_22962 (31155-31337) | |
| 437-607, gnl|mm7|chr15 (100660539-100660722) | |
| 437-607, gnl|Mm7|chr15 (100660721-100660551) | |
| 437-607, gnl|oryCun1|scaffold_90078 (4419-4607) | |
| 437-607, gnl|panTro1|chr10 (51234177-51234365) | |
| 437-607, gnl|rheMac2|chr11 (48478550-48478738) | |
| 437-607, gnl|rn3|chr7 (139516609-139516792) | |
| 437-607, gnl|tetNig1|chr11 (7239502-7239664) | |
| 437-607, gnl|xenTro1|scaffold_1282 (141037-140823) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (3.06748) | |
| cov (0.132153) |