Ss1.1-rpan013_m7.5
|
CTATAATCAAGATACAGAAGACATGATGTATGAACAAGAAAATCCAGAGTCCAGTGAACC
AGTAGTGGAAGATGATGGAAGAATATACCAAGAAGCAGACGACGTAACATACCAAGACTA
TGATGAACAAGTGTATGAGCCAGCGGAAAATGAAGGAACAGAAAGTTCAGATAATGCTGT
AGACGATTCACACACAATTTTAGAAGAAGTGCACGTGCCCCCTGCAGAGGAACAGCAGGA
AGTACCACCAGATACTTAAAGCTTCAAAAAGACTGCCCCTACTACAAGAGGACCAGCTTA
ACCATACGCTCCAAAAGATGGCTGTGATAGATCTTGTGAAGTAATTTCTGAGCAGACCAA
GATCTTTGGGAATGAACACTAAAGATGTTTCAAATGAACCATAGTCCACTGGCATTTTAG
TGTGTGTGTGTGGTTTTTTTTTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTATAATCAAGATACAGAAGACATGATGTATGAACAAGAAAATCCAGAGTCCAGTGAACC
AGTAGTGGAAGATGATGGAAGAATATACCAAGAAGCAGACGACGTAACATACCAAGACTA
TGATGAACAAGTGTATGAGCCAGCGGAAAATGAAGGAACAGAAAGTTCAGATAATGCTGT
AGACGATTCACACACAATTTTAGAAGAAGTGCACGTGCCCCCTGCAGAGGAACAGCAGGA
AGTACCACCAGATACTTAAAGCTTCAAAAAGACTGCCCCTACTACAAGAGGACCAGCTTA
ACCATACGCTCCAAAAGATGGCTGTGATAGATCTTGTGAAGTAATTTCTGAGCAGACCAA
GATCTTTGGGAATGAACACTAAAGATGTTTCAAATGAACCATAGTCCACTGGCATTTTAG
TGTGTGTGTGTGGTTTTTTTTTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
249-441, gnl|bosTau2|chr14 (15484484-15484683) |
|
249-441, gnl|canFam2|chr29 (14933998-14934490) |
|
249-441, gnl|dasNov1|scaffold_284063 (843-1304) |
|
249-441, gnl|galGal2|chr2 (112753311-112753794) |
|
249-441, gnl|hg17|chr8 (62700932-62701397) |
|
249-441, gnl|Hg17|chr8 (62701396-62701203) |
|
249-441, gnl|loxAfr1|scaffold_13584 (21437-21908) |
|
249-441, gnl|mm7|chr4 (9503677-9504124) |
|
249-441, gnl|Mm7|chr4 (9504123-9503934) |
|
249-441, gnl|monDom2|scaffold_4 (101042053-101041550) |
|
249-441, gnl|oryCun1|scaffold_199675 (43645-43190) |
|
249-441, gnl|panTro1|chr7 (64594635-64595100) |
|
249-441, gnl|rheMac2|chr8 (64169284-64169741) |
|
249-441, gnl|rn3|chr5 (23459872-23460345) |
|
249-441, gnl|xenTro1|scaffold_8 (4392761-4393171) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
249-441, gnl|bosTau2|chr14 (15484484-15484683) |
|
249-441, gnl|canFam2|chr29 (14933998-14934490) |
|
249-441, gnl|dasNov1|scaffold_284063 (843-1304) |
|
249-441, gnl|galGal2|chr2 (112753311-112753794) |
|
249-441, gnl|hg17|chr8 (62700932-62701397) |
|
249-441, gnl|Hg17|chr8 (62701396-62701203) |
|
249-441, gnl|loxAfr1|scaffold_13584 (21437-21908) |
|
249-441, gnl|mm7|chr4 (9503677-9504124) |
|
249-441, gnl|Mm7|chr4 (9504123-9503934) |
|
249-441, gnl|monDom2|scaffold_4 (101042053-101041550) |
|
249-441, gnl|oryCun1|scaffold_199675 (43645-43190) |
|
249-441, gnl|panTro1|chr7 (64594635-64595100) |
|
249-441, gnl|rheMac2|chr8 (64169284-64169741) |
|
249-441, gnl|rn3|chr5 (23459872-23460345) |
|
249-441, gnl|xenTro1|scaffold_8 (4392761-4393171) |
|
cte (0.29274) |
|
pan (0.23596) |
|
nep (0.183925) |
|
cki (0.165235) |
|
eru (0.120048) |
|
cte (0.29274) |
|
pan (0.23596) |
|
nep (0.183925) |
|
cki (0.165235) |
|
eru (0.120048) |
