Ss1.1-rpan018_b5.5
|
TGAGTTCGATCCCTGGCCTCACATGCGTGGGTTAAGGACGCAGCATTGCCATATTGCAGT
CAAGGTTGCAAACATGGCTCAGATCTGTCTTTGCTGTGGTGTAGGCTGGCAGCTGTAGCT
CCGGTTTGTCCCCTAAGCTGGGAACCTCCATATGCTGCAGGTGTGGCCCTAAAAGAAACA
AACAAAAGATGCCTTAACTTATGGGATTTTCAAGGAAAAGGGGGTACCACTTAACAAATG
TAGAAACCTTAGGAAATTTACTCTCTCTGTAAACCCTCATCACAGCGTTTCTGATCCTTT
TACGCAAAGCAAGTGTTCGGCACTAACTGTATACCAAAGAGAGCTGTACACAAGAAAATA
TTTGTATAGAGGTGTTCTCTGCAGGGGTTAACTCTCTTCTGCTTAACTATACTTGAGTGC
ATGTAACACAAAAATGAAGAAACAAAACATGTGCCTTCTTTGTAATTTAGGTTAGATTCG
AATCTTTTATGGATTTAGGAATAAGAAAATCAAGATATTTACAACATTGTAAGGTAAAAA
TATTTTCTTTTTTGGCTCACGTTATTTATTATTTATTTATTTATTTTGGCTGCCCTGCGG
CATATGGAATTCAGGCCAGGGATCATATCCTAGCTGGCTTCAGTTGCCTCAGTTGGTACC
TATGCTGCTGGTGTGGCAAAGCTGTATCCTTAACCTACTATGCCAGGCTGGAGCTCGAAC
CTGTGTCTCAGCACTCCAGAGATGCTGCCAATCCCATTGCACCACAGCAGGAACTCCTAG
AAGAAAATATTTTGATGAGTTTTATAAATGTATCAAATCTTGATAAAATATTTTGACCAC
TATTTTGATGAGCCAGGGGCCTATTTTCCTTTTTTCTTAGTTCTCAGCTGACTTCAGAGA
CCCATGGGAAATAAGCTATTATTGTTTGTAACCTCAGAGTTACTAAGATTGCATTTTCAT
ATGTTTAGATTTTGGAAAGTAGAAATAAAGCTGTAGCATGTTTGTTTAAATAATGTCTTC
TTTGTTGCTAGAGATTTTTAAATGAGTCTGTTTTCTAAATATTTCCGTCTAGCAAATTTG
TGCAATACTCAGAAAAATGTGCATTAAAATTTTTTATTATAGAATAACCCTACTAAATAT
AACTATGTGTTAAAACTGCTTTTTAGTAAAACAATTTTCTATTAGCATTTTCCCTGCACT
AGAGGTCATCATAAGAGTATAAGAGGAATAACAATAAGAGGAGTATATATCAAATATTAA
GAAAAATTGACACTTGGAAATTTTTGTATGCTGATACCTTGTATCTTAGCTTCAGTGTGA
TTGTCTTATCAAAGAATTGTTCATATTTAGATATATCATATGTTTGTTAATATATTAAAG
TGTGATGTTTATCCCTGGAATAAAGCACTTTCTCCTATTAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAGTTCGATCCCTGGCCTCACATGCGTGGGTTAAGGACGCAGCATTGCCATATTGCAGT
CAAGGTTGCAAACATGGCTCAGATCTGTCTTTGCTGTGGTGTAGGCTGGCAGCTGTAGCT
CCGGTTTGTCCCCTAAGCTGGGAACCTCCATATGCTGCAGGTGTGGCCCTAAAAGAAACA
AACAAAAGATGCCTTAACTTATGGGATTTTCAAGGAAAAGGGGGTACCACTTAACAAATG
TAGAAACCTTAGGAAATTTACTCTCTCTGTAAACCCTCATCACAGCGTTTCTGATCCTTT
TACGCAAAGCAAGTGTTCGGCACTAACTGTATACCAAAGAGAGCTGTACACAAGAAAATA
TTTGTATAGAGGTGTTCTCTGCAGGGGTTAACTCTCTTCTGCTTAACTATACTTGAGTGC
ATGTAACACAAAAATGAAGAAACAAAACATGTGCCTTCTTTGTAATTTAGGTTAGATTCG
AATCTTTTATGGATTTAGGAATAAGAAAATCAAGATATTTACAACATTGTAAGGTAAAAA
TATTTTCTTTTTTGGCTCACGTTATTTATTATTTATTTATTTATTTTGGCTGCCCTGCGG
CATATGGAATTCAGGCCAGGGATCATATCCTAGCTGGCTTCAGTTGCCTCAGTTGGTACC
TATGCTGCTGGTGTGGCAAAGCTGTATCCTTAACCTACTATGCCAGGCTGGAGCTCGAAC
CTGTGTCTCAGCACTCCAGAGATGCTGCCAATCCCATTGCACCACAGCAGGAACTCCTAG
AAGAAAATATTTTGATGAGTTTTATAAATGTATCAAATCTTGATAAAATATTTTGACCAC
TATTTTGATGAGCCAGGGGCCTATTTTCCTTTTTTCTTAGTTCTCAGCTGACTTCAGAGA
CCCATGGGAAATAAGCTATTATTGTTTGTAACCTCAGAGTTACTAAGATTGCATTTTCAT
ATGTTTAGATTTTGGAAAGTAGAAATAAAGCTGTAGCATGTTTGTTTAAATAATGTCTTC
TTTGTTGCTAGAGATTTTTAAATGAGTCTGTTTTCTAAATATTTCCGTCTAGCAAATTTG
TGCAATACTCAGAAAAATGTGCATTAAAATTTTTTATTATAGAATAACCCTACTAAATAT
AACTATGTGTTAAAACTGCTTTTTAGTAAAACAATTTTCTATTAGCATTTTCCCTGCACT
AGAGGTCATCATAAGAGTATAAGAGGAATAACAATAAGAGGAGTATATATCAAATATTAA
GAAAAATTGACACTTGGAAATTTTTGTATGCTGATACCTTGTATCTTAGCTTCAGTGTGA
TTGTCTTATCAAAGAATTGTTCATATTTAGATATATCATATGTTTGTTAATATATTAAAG
TGTGATGTTTATCCCTGGAATAAAGCACTTTCTCCTATTAAAAAAAAA
|
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184-526, gnl|bosTau2|chr27 (2124426-2124751) |
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184-526, gnl|Hg17|chr4 (177510981-177510649) |
| |
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778-1411, gnl|bosTau2|chr27 (2124762-2125408) |
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778-1411, gnl|canFam2|chr16 (56317515-56316942) |
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778-1411, gnl|dasNov1|scaffold_26702 (12544-13129) |
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778-1411, gnl|hg17|chr4 (177509865-177510443) |
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778-1411, gnl|Hg17|chr4 (177510638-177509971) |
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778-1411, gnl|loxAfr1|scaffold_14260 (37998-38625) |
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778-1411, gnl|panTro1|chr3_random (26593980-26594558) |
|
778-1411, gnl|rheMac2|chr5 (168291719-168292286) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
184-526, gnl|bosTau2|chr27 (2124426-2124751) |
|
184-526, gnl|Hg17|chr4 (177510981-177510649) |
| |
|
778-1411, gnl|bosTau2|chr27 (2124762-2125408) |
|
778-1411, gnl|canFam2|chr16 (56317515-56316942) |
|
778-1411, gnl|dasNov1|scaffold_26702 (12544-13129) |
|
778-1411, gnl|hg17|chr4 (177509865-177510443) |
|
778-1411, gnl|Hg17|chr4 (177510638-177509971) |
|
778-1411, gnl|loxAfr1|scaffold_14260 (37998-38625) |
|
778-1411, gnl|panTro1|chr3_random (26593980-26594558) |
|
778-1411, gnl|rheMac2|chr5 (168291719-168292286) |
|
bfe (4.79544) |
|
isp (2.40601) |
|
vin (2.3279) |
|
tbr (0.770891) |
|
ldo (0.582016) |
|
sme (0.305437) |
|
ste (0.270416) |
|
pan (0.23596) |
|
eye (0.170503) |
|
ctl (0.153069) |
|
che (0.136314) |
|
bfe (4.79544) |
|
isp (2.40601) |
|
vin (2.3279) |
|
tbr (0.770891) |
|
ldo (0.582016) |
|
sme (0.305437) |
|
ste (0.270416) |
|
pan (0.23596) |
|
eye (0.170503) |
|
ctl (0.153069) |
|
che (0.136314) |
