Ss1.1-rpan018_d17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTACCCAACAACTACGTCTGCTACGTCACAGGCTGGGGAAGGCTGCAGACCAACGGGG CTTCTCCTGACATCCTGCAGCAGGGCCAGCTGCTGGTTGTGGACTATGCCACGTGCTCCA AGCCTGGTTGGTGGGGCAGCACTGTGAAGACCAACATGATCTGTGCGGGTGGCGATGGCA TCATTTCCAGCTGCAATGGGGACTCCGGTGGGCCTCTGAACTGCCAGGGGGCTAATGGCC AGTGGCAAGTGCACGGCATAGTCAGCTTCGGGTCCTCCCTCGGTTGCAACTACTACCACA AGCCCTCTGTCTTCACACGGGTCTCCAACTACATCGACTGGATCAACTCGGTGATTGCAA ATAACTAATCGCCAGAAGTCCTGGGGACTGATTCAGATTTGGAAAGGTCACAGGAGGAAA ATAATAATCATAATAAAGTGACAACCACATGAAAAATCTTGGTGAGAGTCTTATTAGCAA ACCGTCCCCCCATCCAGGGCCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTACCCAACAACTACGTCTGCTACGTCACAGGCTGGGGAAGGCTGCAGACCAACGGGG CTTCTCCTGACATCCTGCAGCAGGGCCAGCTGCTGGTTGTGGACTATGCCACGTGCTCCA AGCCTGGTTGGTGGGGCAGCACTGTGAAGACCAACATGATCTGTGCGGGTGGCGATGGCA TCATTTCCAGCTGCAATGGGGACTCCGGTGGGCCTCTGAACTGCCAGGGGGCTAATGGCC AGTGGCAAGTGCACGGCATAGTCAGCTTCGGGTCCTCCCTCGGTTGCAACTACTACCACA AGCCCTCTGTCTTCACACGGGTCTCCAACTACATCGACTGGATCAACTCGGTGATTGCAA ATAACTAATCGCCAGAAGTCCTGGGGACTGATTCAGATTTGGAAAGGTCACAGGAGGAAA ATAATAATCATAATAAAGTGACAACCACATGAAAAATCTTGGTGAGAGTCTTATTAGCAA ACCGTCCCCCCATCCAGGGCCTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 75-196, gnl|bosTau2|chr16 (38716013-38716134) | |
| 75-196, gnl|canFam2|chr2 (84975325-84975147) | |
| 75-196, gnl|danRer3|chr20 (44698012-44698171) | |
| 75-196, gnl|dasNov1|scaffold_197027 (704-539) | |
| 75-196, gnl|echTel1|scaffold_318851 (2431-2598) | |
| 75-196, gnl|fr1|chrUn (186458200-186458025) | |
| 75-196, gnl|hg17|chr1 (15516404-15516582) | |
| 75-196, gnl|Hg17|chr1 (15516430-15516551) | |
| 75-196, gnl|loxAfr1|scaffold_22962 (32380-32228) | |
| 75-196, gnl|mm7|chr4 (141218842-141218677) | |
| 75-196, gnl|Mm7|chr4 (141218814-141218693) | |
| 75-196, gnl|monDom2|scaffold_109 (3849495-3849340) | |
| 75-196, gnl|oryCun1|scaffold_205027 (4429-4588) | |
| 75-196, gnl|panTro1|chr1 (15664384-15664562) | |
| 75-196, gnl|rheMac2|chr1 (18185974-18186152) | |
| 75-196, gnl|rn3|chr5 (160755797-160755632) | |
| 75-196, gnl|tetNig1|chr9 (1636697-1636872) | |
| 75-196, gnl|xenTro1|scaffold_1275 (62491-62319) | |
| 198-352, gnl|bosTau2|chr16 (38737151-38737305) | |
| 198-352, gnl|canFam2|chr27 (6561560-6561655) | |
| 198-352, gnl|danRer3|chrUn (140816615-140816517) | |
| 198-352, gnl|dasNov1|scaffold_72971 (45565-45663) | |
| 198-352, gnl|echTel1|scaffold_320736 (5090-5186) | |
| 198-352, gnl|fr1|chrUn (186456172-186456074) | |
| 198-352, gnl|hg17|chr1 (15539185-15539283) | |
| 198-352, gnl|Hg17|chr1 (15559086-15559240) | |
| 198-352, gnl|loxAfr1|scaffold_47025 (2022-1924) | |
| 198-352, gnl|mm7|chr4 (141196462-141196364) | |
| 198-352, gnl|Mm7|chr4 (141196458-141196304) | |
| 198-352, gnl|monDom2|scaffold_109 (3819130-3819032) | |
| 198-352, gnl|oryCun1|scaffold_148161 (7101-7199) | |
| 198-352, gnl|panTro1|chr1 (15686356-15686454) | |
| 198-352, gnl|rheMac2|chr1 (18210054-18210152) | |
| 198-352, gnl|rn3|chr5 (160735951-160735853) | |
| 198-352, gnl|tetNig1|chr9 (1638760-1638858) | |
| 198-352, gnl|xenTro1|scaffold_1275 (51203-51105) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-196, gnl|bosTau2|chr16 (38716013-38716134) | |
| 75-196, gnl|canFam2|chr2 (84975325-84975147) | |
| 75-196, gnl|danRer3|chr20 (44698012-44698171) | |
| 75-196, gnl|dasNov1|scaffold_197027 (704-539) | |
| 75-196, gnl|echTel1|scaffold_318851 (2431-2598) | |
| 75-196, gnl|fr1|chrUn (186458200-186458025) | |
| 75-196, gnl|hg17|chr1 (15516404-15516582) | |
| 75-196, gnl|Hg17|chr1 (15516430-15516551) | |
| 75-196, gnl|loxAfr1|scaffold_22962 (32380-32228) | |
| 75-196, gnl|mm7|chr4 (141218842-141218677) | |
| 75-196, gnl|Mm7|chr4 (141218814-141218693) | |
| 75-196, gnl|monDom2|scaffold_109 (3849495-3849340) | |
| 75-196, gnl|oryCun1|scaffold_205027 (4429-4588) | |
| 75-196, gnl|panTro1|chr1 (15664384-15664562) | |
| 75-196, gnl|rheMac2|chr1 (18185974-18186152) | |
| 75-196, gnl|rn3|chr5 (160755797-160755632) | |
| 75-196, gnl|tetNig1|chr9 (1636697-1636872) | |
| 75-196, gnl|xenTro1|scaffold_1275 (62491-62319) | |
| 198-352, gnl|bosTau2|chr16 (38737151-38737305) | |
| 198-352, gnl|canFam2|chr27 (6561560-6561655) | |
| 198-352, gnl|danRer3|chrUn (140816615-140816517) | |
| 198-352, gnl|dasNov1|scaffold_72971 (45565-45663) | |
| 198-352, gnl|echTel1|scaffold_320736 (5090-5186) | |
| 198-352, gnl|fr1|chrUn (186456172-186456074) | |
| 198-352, gnl|hg17|chr1 (15539185-15539283) | |
| 198-352, gnl|Hg17|chr1 (15559086-15559240) | |
| 198-352, gnl|loxAfr1|scaffold_47025 (2022-1924) | |
| 198-352, gnl|mm7|chr4 (141196462-141196364) | |
| 198-352, gnl|Mm7|chr4 (141196458-141196304) | |
| 198-352, gnl|monDom2|scaffold_109 (3819130-3819032) | |
| 198-352, gnl|oryCun1|scaffold_148161 (7101-7199) | |
| 198-352, gnl|panTro1|chr1 (15686356-15686454) | |
| 198-352, gnl|rheMac2|chr1 (18210054-18210152) | |
| 198-352, gnl|rn3|chr5 (160735951-160735853) | |
| 198-352, gnl|tetNig1|chr9 (1638760-1638858) | |
| 198-352, gnl|xenTro1|scaffold_1275 (51203-51105) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| pan (0.23596) | |
| hyp (0.142837) |