Ss1.1-rpan026_a6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCACTGAGGAACCATGAACACCTTTGTCTTGCTTGCGCTCCTGGGAGCTGCTGTTGCTT TCCCCACGGATGATGATGACAAGATCGTCGGGGGTTACACCTGTGCAGCAAATTCCGTTC CCTACCAGGTGTCCCTGAATTCTGGCTCCCACTTCTGTGGTGGGTCCCTCATCAACAGCC AGTGGGTGGTGTCTGCTGCTCACTGCTACAAGTCCCGAATCCAGGTGCGTCTGGGAGAAC ACAACATCGACGTCCTTGAGGGCAATGAGCAATTCATCAATGCCGCCAAGATCATCACCC ACCCCAATTTCAATGGAAATACCTTAGATAACGACATCATGCTGATTAAACTGAGCTCAC CTGCCACTCTCAACAGTCGAGTAGCAACTGTCTCACTGCCAAGATCTTGTGCAGCTGCTG GTACCGAGTGTCTCATCTCTGGCTGGGGCAACACCAAAAGCAGTGGCTCCAGCTACCCTT CGCTCCTGCAATGCCTGAAGGCTCCCGTCCTAAGTGACAGTTCTTGCAAGAGTTCCTATC CAGGCCAGATCACCGGAAACATGATCTGTGTGGGCTTCCTGGAGGGTGGAAAGGATTCTT GCCAGGGTGACTCTGGTGGCCCCGTGGTCTGCAATGGACAGCTCCAGGGTATTGTCTCTT GGGGCTATGGCTGCGCCCAGAAAAACAAGCCTGGGGTCTACACCAAGGTATGCAACTATG TGAACTGGATTCAGCAGACCATCGCTGCCAACTAAAGAATTTCATTTCTTCATGACTCTT CCCTTTAGTCATCTTCACCTTCCTCCCATCCTGCGAACAGCATCTAAATAAAAACATTTT GACCTGTACCAGCATCTAAATAAAAACATTTTGAGCTGTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCACTGAGGAACCATGAACACCTTTGTCTTGCTTGCGCTCCTGGGAGCTGCTGTTGCTT TCCCCACGGATGATGATGACAAGATCGTCGGGGGTTACACCTGTGCAGCAAATTCCGTTC CCTACCAGGTGTCCCTGAATTCTGGCTCCCACTTCTGTGGTGGGTCCCTCATCAACAGCC AGTGGGTGGTGTCTGCTGCTCACTGCTACAAGTCCCGAATCCAGGTGCGTCTGGGAGAAC ACAACATCGACGTCCTTGAGGGCAATGAGCAATTCATCAATGCCGCCAAGATCATCACCC ACCCCAATTTCAATGGAAATACCTTAGATAACGACATCATGCTGATTAAACTGAGCTCAC CTGCCACTCTCAACAGTCGAGTAGCAACTGTCTCACTGCCAAGATCTTGTGCAGCTGCTG GTACCGAGTGTCTCATCTCTGGCTGGGGCAACACCAAAAGCAGTGGCTCCAGCTACCCTT CGCTCCTGCAATGCCTGAAGGCTCCCGTCCTAAGTGACAGTTCTTGCAAGAGTTCCTATC CAGGCCAGATCACCGGAAACATGATCTGTGTGGGCTTCCTGGAGGGTGGAAAGGATTCTT GCCAGGGTGACTCTGGTGGCCCCGTGGTCTGCAATGGACAGCTCCAGGGTATTGTCTCTT GGGGCTATGGCTGCGCCCAGAAAAACAAGCCTGGGGTCTACACCAAGGTATGCAACTATG TGAACTGGATTCAGCAGACCATCGCTGCCAACTAAAGAATTTCATTTCTTCATGACTCTT CCCTTTAGTCATCTTCACCTTCCTCCCATCCTGCGAACAGCATCTAAATAAAAACATTTT GACCTGTACCAGCATCTAAATAAAAACATTTTGAGCTGTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 54-214, gnl|bosTau2|chr4 (57993365-57993525) | |
| 54-214, gnl|canFam2|chr16 (9955455-9955272) | |
| 54-214, gnl|danRer3|chrUn (46066888-46066732) | |
| 54-214, gnl|dasNov1|scaffold_196976 (1145-961) | |
| 54-214, gnl|echTel1|scaffold_104043 (2822-2636) | |
| 54-214, gnl|fr1|chrUn (324144030-324143864) | |
| 54-214, gnl|galGal2|chr1 (72206910-72207096) | |
| 54-214, gnl|hg17|chr7 (141442653-141442839) | |
| 54-214, gnl|Hg17|chr7 (141442821-141442658) | |
| 54-214, gnl|loxAfr1|scaffold_34535 (5805-5624) | |
| 54-214, gnl|mm7|chr6 (40964769-40964952) | |
| 54-214, gnl|Mm7|chr6 (40881902-40881740) | |
| 54-214, gnl|monDom2|scaffold_7 (499754-499942) | |
| 54-214, gnl|oryCun1|scaffold_208763 (59492-59684) | |
| 54-214, gnl|panTro1|chr6 (144200038-144200223) | |
| 54-214, gnl|rheMac2|chr3 (180353759-180353581) | |
| 54-214, gnl|rn3|chr4 (68951055-68951227) | |
| 54-214, gnl|tetNig1|chr8 (5826059-5825893) | |
| 54-214, gnl|xenTro1|scaffold_1284 (77265-77439) | |
| 217-467, gnl|bosTau2|chr4 (57966969-57967219) | |
| 217-467, gnl|canFam2|chr16 (9758132-9757864) | |
| 217-467, gnl|danRer3|chrUn (46071780-46072045) | |
| 217-467, gnl|dasNov1|scaffold_4972 (42747-42509) | |
| 217-467, gnl|echTel1|scaffold_104043 (3508-3776) | |
| 217-467, gnl|fr1|chrUn (324144098-324144366) | |
| 217-467, gnl|galGal2|chr1 (72206240-72205972) | |
| 217-467, gnl|hg17|chr7 (141967416-141967684) | |
| 217-467, gnl|Hg17|chr9 (33787829-33788079) | |
| 217-467, gnl|loxAfr1|scaffold_34535 (6760-7025) | |
| 217-467, gnl|mm7|chr6 (41349311-41349579) | |
| 217-467, gnl|Mm7|chr6 (40963723-40963473) | |
| 217-467, gnl|monDom2|scaffold_7 (516032-515766) | |
| 217-467, gnl|oryCun1|scaffold_208763 (58812-58544) | |
| 217-467, gnl|panTro1|chr6 (144763587-144763855) | |
| 217-467, gnl|rheMac2|chr3 (180364601-180364869) | |
| 217-467, gnl|rn3|chr4 (69408497-69408763) | |
| 217-467, gnl|tetNig1|chr8 (5824172-5824434) | |
| 217-467, gnl|xenTro1|scaffold_1284 (30423-30167) | |
| 602-839, gnl|bosTau2|chr4 (57996045-57996282) | |
| 602-839, gnl|Hg17|chr7 (141440424-141440181) | |
| 602-839, gnl|Mm7|chr6 (40878647-40878418) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-214, gnl|bosTau2|chr4 (57993365-57993525) | |
| 54-214, gnl|canFam2|chr16 (9955455-9955272) | |
| 54-214, gnl|danRer3|chrUn (46066888-46066732) | |
| 54-214, gnl|dasNov1|scaffold_196976 (1145-961) | |
| 54-214, gnl|echTel1|scaffold_104043 (2822-2636) | |
| 54-214, gnl|fr1|chrUn (324144030-324143864) | |
| 54-214, gnl|galGal2|chr1 (72206910-72207096) | |
| 54-214, gnl|hg17|chr7 (141442653-141442839) | |
| 54-214, gnl|Hg17|chr7 (141442821-141442658) | |
| 54-214, gnl|loxAfr1|scaffold_34535 (5805-5624) | |
| 54-214, gnl|mm7|chr6 (40964769-40964952) | |
| 54-214, gnl|Mm7|chr6 (40881902-40881740) | |
| 54-214, gnl|monDom2|scaffold_7 (499754-499942) | |
| 54-214, gnl|oryCun1|scaffold_208763 (59492-59684) | |
| 54-214, gnl|panTro1|chr6 (144200038-144200223) | |
| 54-214, gnl|rheMac2|chr3 (180353759-180353581) | |
| 54-214, gnl|rn3|chr4 (68951055-68951227) | |
| 54-214, gnl|tetNig1|chr8 (5826059-5825893) | |
| 54-214, gnl|xenTro1|scaffold_1284 (77265-77439) | |
| 217-467, gnl|bosTau2|chr4 (57966969-57967219) | |
| 217-467, gnl|canFam2|chr16 (9758132-9757864) | |
| 217-467, gnl|danRer3|chrUn (46071780-46072045) | |
| 217-467, gnl|dasNov1|scaffold_4972 (42747-42509) | |
| 217-467, gnl|echTel1|scaffold_104043 (3508-3776) | |
| 217-467, gnl|fr1|chrUn (324144098-324144366) | |
| 217-467, gnl|galGal2|chr1 (72206240-72205972) | |
| 217-467, gnl|hg17|chr7 (141967416-141967684) | |
| 217-467, gnl|Hg17|chr9 (33787829-33788079) | |
| 217-467, gnl|loxAfr1|scaffold_34535 (6760-7025) | |
| 217-467, gnl|mm7|chr6 (41349311-41349579) | |
| 217-467, gnl|Mm7|chr6 (40963723-40963473) | |
| 217-467, gnl|monDom2|scaffold_7 (516032-515766) | |
| 217-467, gnl|oryCun1|scaffold_208763 (58812-58544) | |
| 217-467, gnl|panTro1|chr6 (144763587-144763855) | |
| 217-467, gnl|rheMac2|chr3 (180364601-180364869) | |
| 217-467, gnl|rn3|chr4 (69408497-69408763) | |
| 217-467, gnl|tetNig1|chr8 (5824172-5824434) | |
| 217-467, gnl|xenTro1|scaffold_1284 (30423-30167) | |
| 602-839, gnl|bosTau2|chr4 (57996045-57996282) | |
| 602-839, gnl|Hg17|chr7 (141440424-141440181) | |
| 602-839, gnl|Mm7|chr6 (40878647-40878418) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pan (46.9561) | |
| fty (0.703359) | |
| hea (0.204499) | |
| spl (0.143184) | |
| thg (0.126791) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (46.9561) | |
| fty (0.703359) | |
| hea (0.204499) | |
| spl (0.143184) | |
| thg (0.126791) |