Non-Coding RNA Search

Ss1.1-rpan028_a19.5

Sequence:


               
               TTGGAATGAGCCAAACTGTGGGCCACTTAGATTTCTTTCCAAATGGAGGAAAAGAAATGC
CTGGTTGTCAGAAGAACATTCTCTCTCAGATTGTTGACATAGACGGGATCTGGGAAGGAA
CTCGTGACTTTGTGGCCTGTAATCACTTAAGAAGCTACAAGTATTATGCTGATAGCATCC
TCAACCCTGATGGCTTTGCTGGATTTCCTTGTGACTCTTACAATGTTTTCACTGCAAATA
AGTGCTTCCCCTGTCCAAGTGAAGGCTGTCCACAGATGGGTCATTATGCTGACAGATTTC
CTGGGAAAACAAACGGAGTGAGCCAGGTATTTTATCTAAATACCGGTGATGCCAGCAATT
TCGCCCGTTGGAGATATAAAGTGTCTGTCACACTGTCAGGAAAGAAGGTCACAGGACACA
TACTCGTTTCTTTGTTTGGAAATGAAGGAAACTCTAGGCAGTATGAGATTTACAAGGGTA
CTCTCCAACCAGACAATACTCACTCCAATGAATTTGACTCAGATGTAGAAGTTGGAGATT
TGCAGAAGGTGAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAGAGTGG
GGGCATCCAAGATCACCGTGGAAAGAAACGATGGAAAAGTGTATGACTTCTGTAGCCAAG
AAACTGTGAGGGAAGAAGTTCTGCTCACCCTCAACCCCTGTTAGGAGTTGCTGACATGTG
AACACTGAATCTTACTGCTAATAAAATCTGGTGGTGAAGCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGAATGAGCCAAACTGTGGGCCACTTAGATTTCTTTCCAAATGGAGGAAAAGAAATGC
CTGGTTGTCAGAAGAACATTCTCTCTCAGATTGTTGACATAGACGGGATCTGGGAAGGAA
CTCGTGACTTTGTGGCCTGTAATCACTTAAGAAGCTACAAGTATTATGCTGATAGCATCC
TCAACCCTGATGGCTTTGCTGGATTTCCTTGTGACTCTTACAATGTTTTCACTGCAAATA
AGTGCTTCCCCTGTCCAAGTGAAGGCTGTCCACAGATGGGTCATTATGCTGACAGATTTC
CTGGGAAAACAAACGGAGTGAGCCAGGTATTTTATCTAAATACCGGTGATGCCAGCAATT
TCGCCCGTTGGAGATATAAAGTGTCTGTCACACTGTCAGGAAAGAAGGTCACAGGACACA
TACTCGTTTCTTTGTTTGGAAATGAAGGAAACTCTAGGCAGTATGAGATTTACAAGGGTA
CTCTCCAACCAGACAATACTCACTCCAATGAATTTGACTCAGATGTAGAAGTTGGAGATT
TGCAGAAGGTGAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAGAGTGG
GGGCATCCAAGATCACCGTGGAAAGAAACGATGGAAAAGTGTATGACTTCTGTAGCCAAG
AAACTGTGAGGGAAGAAGTTCTGCTCACCCTCAACCCCTGTTAGGAGTTGCTGACATGTG
AACACTGAATCTTACTGCTAATAAAATCTGGTGGTGAAGCAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|67161|pir||LIPG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|67161|pir||LIPG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-248, - strand, RNAz p=0.532988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-248, - strand, RNAz p=0.532988

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               65-248, gnl|bosTau2|chr26 (23813129-23813308)
               

               
               65-248, gnl|Hg17|chr10 (118305453-118305631)
               

               
               65-248, gnl|Mm7|chr19 (58599290-58599468)
               


               
               473-643, gnl|bosTau2|chr26 (23818667-23818838)
               

               
               473-643, gnl|canFam2|chr28 (30155947-30156151)
               

               
               473-643, gnl|dasNov1|scaffold_13491 (43823-43996)
               

               
               473-643, gnl|echTel1|scaffold_280873 (8002-8204)
               

               
               473-643, gnl|hg17|chr10 (118310946-118311150)
               

               
               473-643, gnl|Hg17|chr10 (118310970-118311141)
               

               
               473-643, gnl|loxAfr1|scaffold_198 (157038-156836)
               

               
               473-643, gnl|mm7|chr19 (58602930-58603132)
               

               
               473-643, gnl|Mm7|chr19 (58602954-58603125)
               

               
               473-643, gnl|monDom2|scaffold_14 (44817965-44817760)
               

               
               473-643, gnl|oryCun1|scaffold_214643 (49636-49835)
               

               
               473-643, gnl|panTro1|chr8 (120503142-120503346)
               

               
               473-643, gnl|rheMac2|chr9 (116189989-116190193)
               

               
               473-643, gnl|rn3|chr1 (265328927-265329131)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-248, gnl|bosTau2|chr26 (23813129-23813308)
               

               
               65-248, gnl|Hg17|chr10 (118305453-118305631)
               

               
               65-248, gnl|Mm7|chr19 (58599290-58599468)
               


               
               473-643, gnl|bosTau2|chr26 (23818667-23818838)
               

               
               473-643, gnl|canFam2|chr28 (30155947-30156151)
               

               
               473-643, gnl|dasNov1|scaffold_13491 (43823-43996)
               

               
               473-643, gnl|echTel1|scaffold_280873 (8002-8204)
               

               
               473-643, gnl|hg17|chr10 (118310946-118311150)
               

               
               473-643, gnl|Hg17|chr10 (118310970-118311141)
               

               
               473-643, gnl|loxAfr1|scaffold_198 (157038-156836)
               

               
               473-643, gnl|mm7|chr19 (58602930-58603132)
               

               
               473-643, gnl|Mm7|chr19 (58602954-58603125)
               

               
               473-643, gnl|monDom2|scaffold_14 (44817965-44817760)
               

               
               473-643, gnl|oryCun1|scaffold_214643 (49636-49835)
               

               
               473-643, gnl|panTro1|chr8 (120503142-120503346)
               

               
               473-643, gnl|rheMac2|chr9 (116189989-116190193)
               

               
               473-643, gnl|rn3|chr1 (265328927-265329131)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pan (38.2256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (38.2256)

	65-248, gnl\|bosTau2\|chr26 (23813129-23813308)
	65-248, gnl\|Hg17\|chr10 (118305453-118305631)
	65-248, gnl\|Mm7\|chr19 (58599290-58599468)

	473-643, gnl\|bosTau2\|chr26 (23818667-23818838)
	473-643, gnl\|canFam2\|chr28 (30155947-30156151)
	473-643, gnl\|dasNov1\|scaffold_13491 (43823-43996)
	473-643, gnl\|echTel1\|scaffold_280873 (8002-8204)
	473-643, gnl\|hg17\|chr10 (118310946-118311150)
	473-643, gnl\|Hg17\|chr10 (118310970-118311141)
	473-643, gnl\|loxAfr1\|scaffold_198 (157038-156836)
	473-643, gnl\|mm7\|chr19 (58602930-58603132)
	473-643, gnl\|Mm7\|chr19 (58602954-58603125)
	473-643, gnl\|monDom2\|scaffold_14 (44817965-44817760)
	473-643, gnl\|oryCun1\|scaffold_214643 (49636-49835)
	473-643, gnl\|panTro1\|chr8 (120503142-120503346)
	473-643, gnl\|rheMac2\|chr9 (116189989-116190193)
	473-643, gnl\|rn3\|chr1 (265328927-265329131)