Ss1.1-rpan028_c23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCAAAAAGATATCACATTTGTTGCTGAATTTCTTACTGAACATTTCAATGAGGCGCCA GACCTTTATAATCGAAAAGGAAAATACTTTAATGTTGAAAAAGTTGGTCAGTACTTGAAA GACGAAGATGATGATCTTGTATCCCCCCCTAACACAGAAGGGAACCAGTGGTACGACTTC CTTCAAAACAGCAACCACCTCAAAGAAAGTCCTTTGCTGTTTCCTTATTATCCTCGAAAA TCATTGCATTTTGTGAAAAGGCGGATGGAGAACGTTATTGATCAGTGCTTGCAAAAGCCA GCAGATGTAATTGGAAAATCAATGAATCAAGCAATATGTATTCCATTATATAGAGATGCT AGAAGTGAGGACTCCACACGGAGATTGTTCAAATTTCCTTTTCTGTGGAATAATAAAACT TCAAACCTACATTATCTTCTTTTTACTATTTTAGAAGATTCCCTTTATAAAATGTGCATC TTAAGGAGACATACTGATATTTCCCAGTCTGTAAGTAATGGACTAATTGCTGTTAAATTT GGGAGCTTCACATATGCCACAACTGAAAAAGTGAGACGAAGCACCTACAGTTGTTTAGAT GCACAGTTTTACGATGATGAAACGGTAACAGTAGTTCTTAAAGACACCGTAGGACGTGAA GGAAGAGATCGACTCCTGGTCCAGTTGCCATTGTCTGGGGTGTATAACAGCGAAGACTCT GCAGAATATCAGTTCACTGGGACTTACTCTACCAGGCTGGATGAGCAGCGGAGTGCTATT CCCACCCGGACCATGCATTTCGAGAAGCACTGGAGGTTACTGGAAAGTATGAAAGCCCAG TACGTTGCTGGGAATGGTTTTCGAAAAGTGTCCTGTGTGTTAAGCTCAAATCTCCGTCAT GTGAGAGTGTTTGAAATGGACATAGATGATGAATGGGAGCTGGATGAGTCTTCAGACGAA GAGGAGGAGGCCAGTAACAAGCCCATAAAAATAAAGGAAGAAGTGTTATCTGAGTCGGAA GCAGAGAACCAGCAGGCCAGTGCTGCTGCTTTAGCTTCAGAGACGGTCATTAAAGTAGAA AAACTTGACCCTGAGCTAGACTCCTGATGTTCAGAAAGGACATAGACGATGGACCAAGAT GACCACTACTTAACTTTTTTGTGTGAAATAAAAACAGTAAATTTTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCAAAAAGATATCACATTTGTTGCTGAATTTCTTACTGAACATTTCAATGAGGCGCCA GACCTTTATAATCGAAAAGGAAAATACTTTAATGTTGAAAAAGTTGGTCAGTACTTGAAA GACGAAGATGATGATCTTGTATCCCCCCCTAACACAGAAGGGAACCAGTGGTACGACTTC CTTCAAAACAGCAACCACCTCAAAGAAAGTCCTTTGCTGTTTCCTTATTATCCTCGAAAA TCATTGCATTTTGTGAAAAGGCGGATGGAGAACGTTATTGATCAGTGCTTGCAAAAGCCA GCAGATGTAATTGGAAAATCAATGAATCAAGCAATATGTATTCCATTATATAGAGATGCT AGAAGTGAGGACTCCACACGGAGATTGTTCAAATTTCCTTTTCTGTGGAATAATAAAACT TCAAACCTACATTATCTTCTTTTTACTATTTTAGAAGATTCCCTTTATAAAATGTGCATC TTAAGGAGACATACTGATATTTCCCAGTCTGTAAGTAATGGACTAATTGCTGTTAAATTT GGGAGCTTCACATATGCCACAACTGAAAAAGTGAGACGAAGCACCTACAGTTGTTTAGAT GCACAGTTTTACGATGATGAAACGGTAACAGTAGTTCTTAAAGACACCGTAGGACGTGAA GGAAGAGATCGACTCCTGGTCCAGTTGCCATTGTCTGGGGTGTATAACAGCGAAGACTCT GCAGAATATCAGTTCACTGGGACTTACTCTACCAGGCTGGATGAGCAGCGGAGTGCTATT CCCACCCGGACCATGCATTTCGAGAAGCACTGGAGGTTACTGGAAAGTATGAAAGCCCAG TACGTTGCTGGGAATGGTTTTCGAAAAGTGTCCTGTGTGTTAAGCTCAAATCTCCGTCAT GTGAGAGTGTTTGAAATGGACATAGATGATGAATGGGAGCTGGATGAGTCTTCAGACGAA GAGGAGGAGGCCAGTAACAAGCCCATAAAAATAAAGGAAGAAGTGTTATCTGAGTCGGAA GCAGAGAACCAGCAGGCCAGTGCTGCTGCTTTAGCTTCAGAGACGGTCATTAAAGTAGAA AAACTTGACCCTGAGCTAGACTCCTGATGTTCAGAAAGGACATAGACGATGGACCAAGAT GACCACTACTTAACTTTTTTGTGTGAAATAAAAACAGTAAATTTTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 879-1108, + strand, RNAz p=0.993504 | |
| 994-1108, - strand, RNAz p=0.998458 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 879-1108, + strand, RNAz p=0.993504 | |
| 994-1108, - strand, RNAz p=0.998458 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 204-304, gnl|bosTau2|chr6 (21616284-21616184) | |
| 204-304, gnl|canFam2|chr3 (87706650-87706533) | |
| 204-304, gnl|danRer3|chrUn (102665175-102665295) | |
| 204-304, gnl|dasNov1|scaffold_50958 (8667-8550) | |
| 204-304, gnl|echTel1|scaffold_278859 (122-239) | |
| 204-304, gnl|fr1|chrUn (37643672-37643567) | |
| 204-304, gnl|galGal2|chr4 (73690568-73690455) | |
| 204-304, gnl|hg17|chr4 (25091529-25091646) | |
| 204-304, gnl|Hg17|chr4 (25091534-25091634) | |
| 204-304, gnl|loxAfr1|scaffold_18685 (28400-28517) | |
| 204-304, gnl|mm7|chr5 (52234543-52234659) | |
| 204-304, gnl|Mm7|chr5 (52234548-52234648) | |
| 204-304, gnl|monDom2|scaffold_10 (13361771-13361658) | |
| 204-304, gnl|oryCun1|scaffold_172797 (46945-47062) | |
| 204-304, gnl|panTro1|chr3 (25665730-25665847) | |
| 204-304, gnl|rheMac2|chr5 (20172005-20172122) | |
| 204-304, gnl|rn3|chr14 (62888096-62887979) | |
| 204-304, gnl|tetNig1|chrUn_random (164131007-164131115) | |
| 204-304, gnl|xenTro1|scaffold_536 (505140-505249) | |
| 405-513, gnl|bosTau2|chr6 (21615336-21615228) | |
| 405-513, gnl|canFam2|chr3 (87705975-87705583) | |
| 405-513, gnl|danRer3|chrUn (102665825-102666245) | |
| 405-513, gnl|dasNov1|scaffold_50958 (8070-7682) | |
| 405-513, gnl|echTel1|scaffold_278859 (1770-2153) | |
| 405-513, gnl|fr1|chrUn (37643473-37643100) | |
| 405-513, gnl|galGal2|chr4 (73689960-73689574) | |
| 405-513, gnl|hg17|chr4 (25092215-25092597) | |
| 405-513, gnl|Hg17|chr4 (25092490-25092598) | |
| 405-513, gnl|loxAfr1|scaffold_18685 (29987-30370) | |
| 405-513, gnl|mm7|chr5 (52235256-52235636) | |
| 405-513, gnl|Mm7|chr5 (52235529-52235637) | |
| 405-513, gnl|monDom2|scaffold_10 (13360266-13359880) | |
| 405-513, gnl|panTro1|chr3 (25666416-25666798) | |
| 405-513, gnl|rheMac2|chr5 (20172698-20173076) | |
| 405-513, gnl|rn3|chr14 (62887358-62886976) | |
| 405-513, gnl|tetNig1|chrUn_random (164131299-164131667) | |
| 405-513, gnl|xenTro1|scaffold_536 (505786-506177) | |
| 580-756, gnl|bosTau2|chr6 (21613367-21613191) | |
| 580-756, gnl|canFam2|chr3 (87703876-87703740) | |
| 580-756, gnl|danRer3|chrUn (102667385-102667538) | |
| 580-756, gnl|dasNov1|scaffold_50958 (4978-4842) | |
| 580-756, gnl|echTel1|scaffold_278859 (4101-4237) | |
| 580-756, gnl|galGal2|chr4 (73687406-73687267) | |
| 580-756, gnl|hg17|chr4 (25094312-25094448) | |
| 580-756, gnl|Hg17|chr4 (25094314-25094490) | |
| 580-756, gnl|loxAfr1|scaffold_18685 (32265-32401) | |
| 580-756, gnl|mm7|chr5 (52237782-52237918) | |
| 580-756, gnl|Mm7|chr5 (52237784-52237960) | |
| 580-756, gnl|monDom2|scaffold_10 (13357491-13357355) | |
| 580-756, gnl|oryCun1|scaffold_172797 (51612-51748) | |
| 580-756, gnl|panTro1|chr3 (25668513-25668649) | |
| 580-756, gnl|rheMac2|chr5 (20174898-20175034) | |
| 580-756, gnl|rn3|chr14 (62884836-62884700) | |
| 580-756, gnl|tetNig1|chr1_random (1812537-1812665) | |
| 580-756, gnl|xenTro1|scaffold_536 (506737-506873) | |
| 879-1108, gnl|bosTau2|chr6 (21612047-21611818) | |
| 879-1108, gnl|canFam2|chr3 (87702362-87702136) | |
| 879-1108, gnl|danRer3|chrUn (102669821-102670106) | |
| 879-1108, gnl|dasNov1|scaffold_50958 (3690-3455) | |
| 879-1108, gnl|echTel1|scaffold_278859 (6599-6806) | |
| 879-1108, gnl|galGal2|chr4 (73686258-73686069) | |
| 879-1108, gnl|hg17|chr4 (25095969-25096195) | |
| 879-1108, gnl|Hg17|chr4 (25096045-25096274) | |
| 879-1108, gnl|loxAfr1|scaffold_107880 (5242-5007) | |
| 879-1108, gnl|mm7|chr5 (52239615-52239851) | |
| 879-1108, gnl|Mm7|chr5 (52239701-52239927) | |
| 879-1108, gnl|monDom2|scaffold_10 (13355141-13354879) | |
| 879-1108, gnl|oryCun1|scaffold_172797 (55463-55696) | |
| 879-1108, gnl|panTro1|chr3 (25670168-25670394) | |
| 879-1108, gnl|rheMac2|chr5 (20176538-20176772) | |
| 879-1108, gnl|rn3|chr14 (62882918-62882682) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-304, gnl|bosTau2|chr6 (21616284-21616184) | |
| 204-304, gnl|canFam2|chr3 (87706650-87706533) | |
| 204-304, gnl|danRer3|chrUn (102665175-102665295) | |
| 204-304, gnl|dasNov1|scaffold_50958 (8667-8550) | |
| 204-304, gnl|echTel1|scaffold_278859 (122-239) | |
| 204-304, gnl|fr1|chrUn (37643672-37643567) | |
| 204-304, gnl|galGal2|chr4 (73690568-73690455) | |
| 204-304, gnl|hg17|chr4 (25091529-25091646) | |
| 204-304, gnl|Hg17|chr4 (25091534-25091634) | |
| 204-304, gnl|loxAfr1|scaffold_18685 (28400-28517) | |
| 204-304, gnl|mm7|chr5 (52234543-52234659) | |
| 204-304, gnl|Mm7|chr5 (52234548-52234648) | |
| 204-304, gnl|monDom2|scaffold_10 (13361771-13361658) | |
| 204-304, gnl|oryCun1|scaffold_172797 (46945-47062) | |
| 204-304, gnl|panTro1|chr3 (25665730-25665847) | |
| 204-304, gnl|rheMac2|chr5 (20172005-20172122) | |
| 204-304, gnl|rn3|chr14 (62888096-62887979) | |
| 204-304, gnl|tetNig1|chrUn_random (164131007-164131115) | |
| 204-304, gnl|xenTro1|scaffold_536 (505140-505249) | |
| 405-513, gnl|bosTau2|chr6 (21615336-21615228) | |
| 405-513, gnl|canFam2|chr3 (87705975-87705583) | |
| 405-513, gnl|danRer3|chrUn (102665825-102666245) | |
| 405-513, gnl|dasNov1|scaffold_50958 (8070-7682) | |
| 405-513, gnl|echTel1|scaffold_278859 (1770-2153) | |
| 405-513, gnl|fr1|chrUn (37643473-37643100) | |
| 405-513, gnl|galGal2|chr4 (73689960-73689574) | |
| 405-513, gnl|hg17|chr4 (25092215-25092597) | |
| 405-513, gnl|Hg17|chr4 (25092490-25092598) | |
| 405-513, gnl|loxAfr1|scaffold_18685 (29987-30370) | |
| 405-513, gnl|mm7|chr5 (52235256-52235636) | |
| 405-513, gnl|Mm7|chr5 (52235529-52235637) | |
| 405-513, gnl|monDom2|scaffold_10 (13360266-13359880) | |
| 405-513, gnl|panTro1|chr3 (25666416-25666798) | |
| 405-513, gnl|rheMac2|chr5 (20172698-20173076) | |
| 405-513, gnl|rn3|chr14 (62887358-62886976) | |
| 405-513, gnl|tetNig1|chrUn_random (164131299-164131667) | |
| 405-513, gnl|xenTro1|scaffold_536 (505786-506177) | |
| 580-756, gnl|bosTau2|chr6 (21613367-21613191) | |
| 580-756, gnl|canFam2|chr3 (87703876-87703740) | |
| 580-756, gnl|danRer3|chrUn (102667385-102667538) | |
| 580-756, gnl|dasNov1|scaffold_50958 (4978-4842) | |
| 580-756, gnl|echTel1|scaffold_278859 (4101-4237) | |
| 580-756, gnl|galGal2|chr4 (73687406-73687267) | |
| 580-756, gnl|hg17|chr4 (25094312-25094448) | |
| 580-756, gnl|Hg17|chr4 (25094314-25094490) | |
| 580-756, gnl|loxAfr1|scaffold_18685 (32265-32401) | |
| 580-756, gnl|mm7|chr5 (52237782-52237918) | |
| 580-756, gnl|Mm7|chr5 (52237784-52237960) | |
| 580-756, gnl|monDom2|scaffold_10 (13357491-13357355) | |
| 580-756, gnl|oryCun1|scaffold_172797 (51612-51748) | |
| 580-756, gnl|panTro1|chr3 (25668513-25668649) | |
| 580-756, gnl|rheMac2|chr5 (20174898-20175034) | |
| 580-756, gnl|rn3|chr14 (62884836-62884700) | |
| 580-756, gnl|tetNig1|chr1_random (1812537-1812665) | |
| 580-756, gnl|xenTro1|scaffold_536 (506737-506873) | |
| 879-1108, gnl|bosTau2|chr6 (21612047-21611818) | |
| 879-1108, gnl|canFam2|chr3 (87702362-87702136) | |
| 879-1108, gnl|danRer3|chrUn (102669821-102670106) | |
| 879-1108, gnl|dasNov1|scaffold_50958 (3690-3455) | |
| 879-1108, gnl|echTel1|scaffold_278859 (6599-6806) | |
| 879-1108, gnl|galGal2|chr4 (73686258-73686069) | |
| 879-1108, gnl|hg17|chr4 (25095969-25096195) | |
| 879-1108, gnl|Hg17|chr4 (25096045-25096274) | |
| 879-1108, gnl|loxAfr1|scaffold_107880 (5242-5007) | |
| 879-1108, gnl|mm7|chr5 (52239615-52239851) | |
| 879-1108, gnl|Mm7|chr5 (52239701-52239927) | |
| 879-1108, gnl|monDom2|scaffold_10 (13355141-13354879) | |
| 879-1108, gnl|oryCun1|scaffold_172797 (55463-55696) | |
| 879-1108, gnl|panTro1|chr3 (25670168-25670394) | |
| 879-1108, gnl|rheMac2|chr5 (20176538-20176772) | |
| 879-1108, gnl|rn3|chr14 (62882918-62882682) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ova (0.258264) | |
| pan (0.23596) | |
| aor (0.195274) | |
| col (0.195008) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cje (0.165235) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ova (0.258264) | |
| pan (0.23596) | |
| aor (0.195274) | |
| col (0.195008) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cje (0.165235) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| pgl (0.118483) | |
| ebs (0.118301) |