Ss1.1-rpan028_k13.5
|
GAGAGATGGGGGTAGATGTTTCTGTTGCTACTAAATTGAAGGGAGCACTACTTCTTTTTC
TCTCGTGTTAGTAATAATTGCAAAAAAGCTTGTGCGTTCTTTCTAAGAAAAAGCAAAAAA
ACAAACAAAAAAATTTATAACCCCACCAAAACAAGGGACCTAATAAAACTGAGCAGTGTT
ACTGTATTTTTAAAAAAATATTTTTGTAGACTCATTTTCAGGTTATTAAACATAAAAGAA
ACAGATATCCCTCTTTTTTTAAAGTAGTTAAAACATCGATGATTTTTATTGTCAGTTTTT
AGACGTAATTTCCTAGTAAGCTTGTGGCATTAGAAAAATAGATTAATTTTTTTTAGTGAA
ATTAGTTGGAACATTTATTAATGAACATAACAAATATTTTTCCAGAGTTAAATATGGACC
TTGACTATGTGTTTACTAATAATAAATGAAGCCAGATAGAATTTTTTTTTTTAAGGTCAT
AAAATATGGCCTTTGTTAAAGAACACTAAAGCTAGAAATCTAAAGTAAGAACAACTTTTT
AAAGGCTATTTCCTATTATTGTTTAAGTGTTTAAAGCCCTGCAGAATTCATGATAAGGTG
CTATTTATACTATATTTCTTATTATAAAACAACTGCCAGAATATCTTGTCTTTTTAGTCC
TAAGTCAATCAATAGATGTCAACATTTTATCTAATAATTTTGCAGAGAAAAGGCATATTA
AAAATTGAAATAAAAAATAATTTCAGAGTTCTTTCTTTTAAGATGTTGTATTTAGGATAT
GAAATGCCATTTCTTTCATGGACTATACAACACAGCGTAAAACATTTAGTCTCCTGGGGG
TACTGCTGACTCCAGCGTGGGAGAAAAGCGCTCTGTGGAGGAAGGTGATCTGGATTGAGA
GAATGCAACATTCATGAACAATAAAAGCTGTTAAAAGGAAATTGTAGATTAACTTAATTG
GGAAAATAGGTGATTGACAGAGACTGTTTCCCTAACACACTACATCATTTATGTGTTAGT
ACTTTAATTTAAAAAAAAAAATTTCTACTTTTTGTAGTATGACATATGTGTGTTTATTTT
TAATTTAGATTGCTATGCATACAGAAAGTATGCAGAAAAATCAGTCAGATCAAACCAATT
TACCTGGAGTTTGGTACTGGTTTTTACTTCTCTGATTCTGTATAAGAAAAATAAATACAA
TTGAATTTCCAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGAGATGGGGGTAGATGTTTCTGTTGCTACTAAATTGAAGGGAGCACTACTTCTTTTTC
TCTCGTGTTAGTAATAATTGCAAAAAAGCTTGTGCGTTCTTTCTAAGAAAAAGCAAAAAA
ACAAACAAAAAAATTTATAACCCCACCAAAACAAGGGACCTAATAAAACTGAGCAGTGTT
ACTGTATTTTTAAAAAAATATTTTTGTAGACTCATTTTCAGGTTATTAAACATAAAAGAA
ACAGATATCCCTCTTTTTTTAAAGTAGTTAAAACATCGATGATTTTTATTGTCAGTTTTT
AGACGTAATTTCCTAGTAAGCTTGTGGCATTAGAAAAATAGATTAATTTTTTTTAGTGAA
ATTAGTTGGAACATTTATTAATGAACATAACAAATATTTTTCCAGAGTTAAATATGGACC
TTGACTATGTGTTTACTAATAATAAATGAAGCCAGATAGAATTTTTTTTTTTAAGGTCAT
AAAATATGGCCTTTGTTAAAGAACACTAAAGCTAGAAATCTAAAGTAAGAACAACTTTTT
AAAGGCTATTTCCTATTATTGTTTAAGTGTTTAAAGCCCTGCAGAATTCATGATAAGGTG
CTATTTATACTATATTTCTTATTATAAAACAACTGCCAGAATATCTTGTCTTTTTAGTCC
TAAGTCAATCAATAGATGTCAACATTTTATCTAATAATTTTGCAGAGAAAAGGCATATTA
AAAATTGAAATAAAAAATAATTTCAGAGTTCTTTCTTTTAAGATGTTGTATTTAGGATAT
GAAATGCCATTTCTTTCATGGACTATACAACACAGCGTAAAACATTTAGTCTCCTGGGGG
TACTGCTGACTCCAGCGTGGGAGAAAAGCGCTCTGTGGAGGAAGGTGATCTGGATTGAGA
GAATGCAACATTCATGAACAATAAAAGCTGTTAAAAGGAAATTGTAGATTAACTTAATTG
GGAAAATAGGTGATTGACAGAGACTGTTTCCCTAACACACTACATCATTTATGTGTTAGT
ACTTTAATTTAAAAAAAAAAATTTCTACTTTTTGTAGTATGACATATGTGTGTTTATTTT
TAATTTAGATTGCTATGCATACAGAAAGTATGCAGAAAAATCAGTCAGATCAAACCAATT
TACCTGGAGTTTGGTACTGGTTTTTACTTCTCTGATTCTGTATAAGAAAAATAAATACAA
TTGAATTTCCAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1094-1210, CR454332 Normalized and Subtracted bovine embryonic and
(emb|CR454332.2|), blast E-value=0, identity=95.73% |
|
1094-1211, 39084 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|AW356609.1|),
blast E-value=0, identity=95.76% |
|
1094-1210, UMC-bend_0A02-004-a09 Day 5 Uterus bend Bos taurus cDNA 3', mRNA
(gb|CK727967.1|), blast E-value=0, identity=95.73% |
|
1094-1210, UMC-pd3end3-012-e12 Endometrium gilt D3 of estrous cycle pd3end Sus
(gb|CO989200.1|), blast E-value=0, identity=100% |
|
1094-1210, UMC-pd6end1-001-d06 Endometrium gilt D6 of estrous cycle pd6end Sus
(gb|CO991754.1|), blast E-value=0, identity=100% |
|
1094-1210, UMC-pd6end1-006-d09 Endometrium gilt D6 of estrous cycle pd6end Sus
(gb|CO992056.1|), blast E-value=0, identity=99.15% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1094-1210, CR454332 Normalized and Subtracted bovine embryonic and
(emb|CR454332.2|), blast E-value=0, identity=95.73% |
|
1094-1211, 39084 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|AW356609.1|),
blast E-value=0, identity=95.76% |
|
1094-1210, UMC-bend_0A02-004-a09 Day 5 Uterus bend Bos taurus cDNA 3', mRNA
(gb|CK727967.1|), blast E-value=0, identity=95.73% |
|
1094-1210, UMC-pd3end3-012-e12 Endometrium gilt D3 of estrous cycle pd3end Sus
(gb|CO989200.1|), blast E-value=0, identity=100% |
|
1094-1210, UMC-pd6end1-001-d06 Endometrium gilt D6 of estrous cycle pd6end Sus
(gb|CO991754.1|), blast E-value=0, identity=100% |
|
1094-1210, UMC-pd6end1-006-d09 Endometrium gilt D6 of estrous cycle pd6end Sus
(gb|CO992056.1|), blast E-value=0, identity=99.15% |
|
1-691, gnl|bosTau2|chr1 (75220330-75219649) |
|
1-691, gnl|Hg17|chr3 (150719063-150718387) |
|
1-691, gnl|Mm7|chr3 (57584075-57583350) |
| |
|
900-1211, gnl|bosTau2|chr1 (75219311-75219003) |
|
900-1211, gnl|canFam2|chr23 (47331044-47331359) |
|
900-1211, gnl|echTel1|scaffold_292400 (32304-32653) |
|
900-1211, gnl|hg17|chr3 (150717638-150717937) |
|
900-1211, gnl|Hg17|chr3 (150718023-150717720) |
|
900-1211, gnl|mm7|chr3 (57582642-57582945) |
|
900-1211, gnl|Mm7|chr3 (57583020-57582704) |
|
900-1211, gnl|monDom2|scaffold_28 (21058906-21059230) |
|
900-1211, gnl|oryCun1|scaffold_169826 (81779-81476) |
|
900-1211, gnl|rheMac2|chr2 (138278543-138278245) |
|
900-1211, gnl|rn3|chr2 (146660812-146661114) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-691, gnl|bosTau2|chr1 (75220330-75219649) |
|
1-691, gnl|Hg17|chr3 (150719063-150718387) |
|
1-691, gnl|Mm7|chr3 (57584075-57583350) |
| |
|
900-1211, gnl|bosTau2|chr1 (75219311-75219003) |
|
900-1211, gnl|canFam2|chr23 (47331044-47331359) |
|
900-1211, gnl|echTel1|scaffold_292400 (32304-32653) |
|
900-1211, gnl|hg17|chr3 (150717638-150717937) |
|
900-1211, gnl|Hg17|chr3 (150718023-150717720) |
|
900-1211, gnl|mm7|chr3 (57582642-57582945) |
|
900-1211, gnl|Mm7|chr3 (57583020-57582704) |
|
900-1211, gnl|monDom2|scaffold_28 (21058906-21059230) |
|
900-1211, gnl|oryCun1|scaffold_169826 (81779-81476) |
|
900-1211, gnl|rheMac2|chr2 (138278543-138278245) |
|
900-1211, gnl|rn3|chr2 (146660812-146661114) |
|
ski (0.586941) |
|
cmu (0.55918) |
|
gul (0.532765) |
|
aor (0.390549) |
|
mgm (0.360685) |
|
vin (0.332557) |
|
mga (0.32041) |
|
sme (0.305437) |
|
cte (0.29274) |
|
csk (0.281492) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ret (0.257467) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
fco (0.157208) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
ova (0.129132) |
|
eje (0.0988338) |
|
ski (0.586941) |
|
cmu (0.55918) |
|
gul (0.532765) |
|
aor (0.390549) |
|
mgm (0.360685) |
|
vin (0.332557) |
|
mga (0.32041) |
|
sme (0.305437) |
|
cte (0.29274) |
|
csk (0.281492) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ret (0.257467) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
fco (0.157208) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
ova (0.129132) |
|
eje (0.0988338) |
