Ss1.1-rpan028_m11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACACACGAAGTTCTGAAAAGAGTCTCACTCTCTTTCCACCTGCCCTGTTCCACCTTCTG GTGTCAAAAGCCCCCAACTCTGTTCCGACAGGCAGCAAAAATGAAAACCATTTACTTTGT GGCTGGATTGTTTGTAATGCTGGTACAAGGCAGCTGGCAACGTTCCCTTCAGAATACAGA GGAGAAATCCAGATCATTCCCAGCTCCCCAGACGGACCCTCTCGATGATCCAGATCAGAT GACTGAAGACAAGCGCCACTCACAGGGCACGTTTACCAGTGACTACAGCAAGTATCTGGA CTCCAGGCGTGCCCAGGATTTTGTGCAGTGGCTGATGAACACCAAGAGGAACAAGAATAA CATTGCCAAACGTCACGATGAATTTGAGAGACATGCTGAAGGGACCTTTACCAGTGATGT AAGTTCTTATTTGGAAGGCCAAGCTGCCAAGGAATTCATTGCTTGGCTGGTGAAAGGCCG AGGAAGGCGAGATTTCCCAGAGGAAGTTACCATTGTCGAAGAACTCCGCCGCAGACACGC TGATGGCTCCTTCTCAGATGAAATGAACACTGTTCTCGATAATCTTGCCACCCGAGACTT TATAAATTGGCTCCTTCACACCAAAATTACTGACAGTCTCTAGGAAGTATGTCACTAATC AAGATCGTGTTCACAACATCACCTGCCAGCCATGTGGGATGTTTGAAATTTTAAGTTCTG TAAATTTAAGAGGTGTATTCTAAAGCCATATTGCTTTGCATGCCAATAAGTAAATTTTCT TTTATTATTGTATAACCAAAAGATTATAAATGGAATAAACCATTCTCAAAATATTACTAA AATATCAGCTTTAAAATATCAAAGTGCAGAATTCTATTTCCTTCTTATTTTGGATGAAGT ATCCTAACCTGCTTACATGTGGCCTTGAAATTGTTTTCTATTATATAATTTGTATATATA AATTGCACCAATTGCAACATATCTGCATTACAATAATAGGATAAGGGGAGGACTGGTAGC CACAGTTGTGAAACTGCAAAGAGAACTTTCTTCTTGAAACGATTATCATAGAACTGGTCA GCTTTCAAAGATAGGCAAATAAAACTTTCTAGCTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACACACGAAGTTCTGAAAAGAGTCTCACTCTCTTTCCACCTGCCCTGTTCCACCTTCTG GTGTCAAAAGCCCCCAACTCTGTTCCGACAGGCAGCAAAAATGAAAACCATTTACTTTGT GGCTGGATTGTTTGTAATGCTGGTACAAGGCAGCTGGCAACGTTCCCTTCAGAATACAGA GGAGAAATCCAGATCATTCCCAGCTCCCCAGACGGACCCTCTCGATGATCCAGATCAGAT GACTGAAGACAAGCGCCACTCACAGGGCACGTTTACCAGTGACTACAGCAAGTATCTGGA CTCCAGGCGTGCCCAGGATTTTGTGCAGTGGCTGATGAACACCAAGAGGAACAAGAATAA CATTGCCAAACGTCACGATGAATTTGAGAGACATGCTGAAGGGACCTTTACCAGTGATGT AAGTTCTTATTTGGAAGGCCAAGCTGCCAAGGAATTCATTGCTTGGCTGGTGAAAGGCCG AGGAAGGCGAGATTTCCCAGAGGAAGTTACCATTGTCGAAGAACTCCGCCGCAGACACGC TGATGGCTCCTTCTCAGATGAAATGAACACTGTTCTCGATAATCTTGCCACCCGAGACTT TATAAATTGGCTCCTTCACACCAAAATTACTGACAGTCTCTAGGAAGTATGTCACTAATC AAGATCGTGTTCACAACATCACCTGCCAGCCATGTGGGATGTTTGAAATTTTAAGTTCTG TAAATTTAAGAGGTGTATTCTAAAGCCATATTGCTTTGCATGCCAATAAGTAAATTTTCT TTTATTATTGTATAACCAAAAGATTATAAATGGAATAAACCATTCTCAAAATATTACTAA AATATCAGCTTTAAAATATCAAAGTGCAGAATTCTATTTCCTTCTTATTTTGGATGAAGT ATCCTAACCTGCTTACATGTGGCCTTGAAATTGTTTTCTATTATATAATTTGTATATATA AATTGCACCAATTGCAACATATCTGCATTACAATAATAGGATAAGGGGAGGACTGGTAGC CACAGTTGTGAAACTGCAAAGAGAACTTTCTTCTTGAAACGATTATCATAGAACTGGTCA GCTTTCAAAGATAGGCAAATAAAACTTTCTAGCTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 375-492, + strand, RNAz p=0.75105 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 375-492, + strand, RNAz p=0.75105 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 78-192, gnl|bosTau2|chr2 (23192025-23192139) | |
| 78-192, gnl|canFam2|chr36 (10561904-10562023) | |
| 78-192, gnl|danRer3|chr22 (44209814-44209717) | |
| 78-192, gnl|galGal2|chr7 (21957385-21957266) | |
| 78-192, gnl|hg17|chr2 (162831102-162831221) | |
| 78-192, gnl|Hg17|chr2 (162831218-162831104) | |
| 78-192, gnl|loxAfr1|scaffold_14034 (12204-12323) | |
| 78-192, gnl|mm7|chr2 (62411012-62411134) | |
| 78-192, gnl|Mm7|chr2 (62411131-62411014) | |
| 78-192, gnl|monDom2|scaffold_2 (56763273-56763390) | |
| 78-192, gnl|oryCun1|scaffold_172740 (89111-88992) | |
| 78-192, gnl|panTro1|chr13 (52227809-52227928) | |
| 78-192, gnl|rheMac2|chr12 (25722132-25722251) | |
| 78-192, gnl|rn3|chr3 (44334283-44334406) | |
| 78-192, gnl|xenTro1|scaffold_576 (809244-809126) | |
| 352-492, gnl|bosTau2|chr2 (23196009-23196149) | |
| 352-492, gnl|canFam2|chr36 (10558392-10558497) | |
| 352-492, gnl|danRer3|chr22 (10050620-10050723) | |
| 352-492, gnl|echTel1|scaffold_293705 (8498-8393) | |
| 352-492, gnl|galGal2|chr7 (21960566-21960461) | |
| 352-492, gnl|hg17|chr2 (162827553-162827658) | |
| 352-492, gnl|Hg17|chr2 (162827697-162827557) | |
| 352-492, gnl|loxAfr1|scaffold_14034 (8717-8822) | |
| 352-492, gnl|mm7|chr2 (62407369-62407474) | |
| 352-492, gnl|Mm7|chr2 (62407513-62407373) | |
| 352-492, gnl|monDom2|scaffold_2 (56756050-56756155) | |
| 352-492, gnl|panTro1|chr13 (52224279-52224384) | |
| 352-492, gnl|rheMac2|chr12 (25718584-25718689) | |
| 352-492, gnl|rn3|chr3 (44330662-44330767) | |
| 352-492, gnl|tetNig1|chr3 (3298966-3298861) | |
| 352-492, gnl|xenTro1|scaffold_576 (815493-815388) | |
| 493-636, gnl|bosTau2|chr2 (23197865-23198008) | |
| 493-636, gnl|canFam2|chr36 (10556902-10557024) | |
| 493-636, gnl|dasNov1|scaffold_80250 (3864-3742) | |
| 493-636, gnl|echTel1|scaffold_293705 (9986-9867) | |
| 493-636, gnl|galGal2|chr7 (21962856-21962734) | |
| 493-636, gnl|hg17|chr2 (162826041-162826163) | |
| 493-636, gnl|Hg17|chr2 (162826187-162826044) | |
| 493-636, gnl|loxAfr1|scaffold_14034 (6211-6333) | |
| 493-636, gnl|mm7|chr2 (62406262-62406384) | |
| 493-636, gnl|Mm7|chr2 (62406408-62406265) | |
| 493-636, gnl|monDom2|scaffold_2 (56754485-56754607) | |
| 493-636, gnl|panTro1|chr13 (52222763-52222885) | |
| 493-636, gnl|rheMac2|chr12 (25717068-25717190) | |
| 493-636, gnl|rn3|chr3 (44329549-44329671) | |
| 493-636, gnl|tetNig1|chr3 (3299426-3299319) | |
| 493-636, gnl|xenTro1|scaffold_576 (821081-820959) | |
| 652-1087, gnl|bosTau2|chr2 (23198674-23199088) | |
| 652-1087, gnl|canFam2|chr36 (10555723-10556477) | |
| 652-1087, gnl|dasNov1|scaffold_80250 (5063-4342) | |
| 652-1087, gnl|echTel1|scaffold_293705 (11369-10602) | |
| 652-1087, gnl|galGal2|chr7 (21964144-21963396) | |
| 652-1087, gnl|hg17|chr2 (162824838-162825607) | |
| 652-1087, gnl|Hg17|chr2 (162825375-162824938) | |
| 652-1087, gnl|loxAfr1|scaffold_14034 (4986-5766) | |
| 652-1087, gnl|mm7|chr2 (62405037-62405754) | |
| 652-1087, gnl|Mm7|chr2 (62405521-62405122) | |
| 652-1087, gnl|monDom2|scaffold_2 (56752033-56752838) | |
| 652-1087, gnl|panTro1|chr13 (52221560-52222329) | |
| 652-1087, gnl|rheMac2|chr12 (25715861-25716635) | |
| 652-1087, gnl|rn3|chr3 (44328335-44329051) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-192, gnl|bosTau2|chr2 (23192025-23192139) | |
| 78-192, gnl|canFam2|chr36 (10561904-10562023) | |
| 78-192, gnl|danRer3|chr22 (44209814-44209717) | |
| 78-192, gnl|galGal2|chr7 (21957385-21957266) | |
| 78-192, gnl|hg17|chr2 (162831102-162831221) | |
| 78-192, gnl|Hg17|chr2 (162831218-162831104) | |
| 78-192, gnl|loxAfr1|scaffold_14034 (12204-12323) | |
| 78-192, gnl|mm7|chr2 (62411012-62411134) | |
| 78-192, gnl|Mm7|chr2 (62411131-62411014) | |
| 78-192, gnl|monDom2|scaffold_2 (56763273-56763390) | |
| 78-192, gnl|oryCun1|scaffold_172740 (89111-88992) | |
| 78-192, gnl|panTro1|chr13 (52227809-52227928) | |
| 78-192, gnl|rheMac2|chr12 (25722132-25722251) | |
| 78-192, gnl|rn3|chr3 (44334283-44334406) | |
| 78-192, gnl|xenTro1|scaffold_576 (809244-809126) | |
| 352-492, gnl|bosTau2|chr2 (23196009-23196149) | |
| 352-492, gnl|canFam2|chr36 (10558392-10558497) | |
| 352-492, gnl|danRer3|chr22 (10050620-10050723) | |
| 352-492, gnl|echTel1|scaffold_293705 (8498-8393) | |
| 352-492, gnl|galGal2|chr7 (21960566-21960461) | |
| 352-492, gnl|hg17|chr2 (162827553-162827658) | |
| 352-492, gnl|Hg17|chr2 (162827697-162827557) | |
| 352-492, gnl|loxAfr1|scaffold_14034 (8717-8822) | |
| 352-492, gnl|mm7|chr2 (62407369-62407474) | |
| 352-492, gnl|Mm7|chr2 (62407513-62407373) | |
| 352-492, gnl|monDom2|scaffold_2 (56756050-56756155) | |
| 352-492, gnl|panTro1|chr13 (52224279-52224384) | |
| 352-492, gnl|rheMac2|chr12 (25718584-25718689) | |
| 352-492, gnl|rn3|chr3 (44330662-44330767) | |
| 352-492, gnl|tetNig1|chr3 (3298966-3298861) | |
| 352-492, gnl|xenTro1|scaffold_576 (815493-815388) | |
| 493-636, gnl|bosTau2|chr2 (23197865-23198008) | |
| 493-636, gnl|canFam2|chr36 (10556902-10557024) | |
| 493-636, gnl|dasNov1|scaffold_80250 (3864-3742) | |
| 493-636, gnl|echTel1|scaffold_293705 (9986-9867) | |
| 493-636, gnl|galGal2|chr7 (21962856-21962734) | |
| 493-636, gnl|hg17|chr2 (162826041-162826163) | |
| 493-636, gnl|Hg17|chr2 (162826187-162826044) | |
| 493-636, gnl|loxAfr1|scaffold_14034 (6211-6333) | |
| 493-636, gnl|mm7|chr2 (62406262-62406384) | |
| 493-636, gnl|Mm7|chr2 (62406408-62406265) | |
| 493-636, gnl|monDom2|scaffold_2 (56754485-56754607) | |
| 493-636, gnl|panTro1|chr13 (52222763-52222885) | |
| 493-636, gnl|rheMac2|chr12 (25717068-25717190) | |
| 493-636, gnl|rn3|chr3 (44329549-44329671) | |
| 493-636, gnl|tetNig1|chr3 (3299426-3299319) | |
| 493-636, gnl|xenTro1|scaffold_576 (821081-820959) | |
| 652-1087, gnl|bosTau2|chr2 (23198674-23199088) | |
| 652-1087, gnl|canFam2|chr36 (10555723-10556477) | |
| 652-1087, gnl|dasNov1|scaffold_80250 (5063-4342) | |
| 652-1087, gnl|echTel1|scaffold_293705 (11369-10602) | |
| 652-1087, gnl|galGal2|chr7 (21964144-21963396) | |
| 652-1087, gnl|hg17|chr2 (162824838-162825607) | |
| 652-1087, gnl|Hg17|chr2 (162825375-162824938) | |
| 652-1087, gnl|loxAfr1|scaffold_14034 (4986-5766) | |
| 652-1087, gnl|mm7|chr2 (62405037-62405754) | |
| 652-1087, gnl|Mm7|chr2 (62405521-62405122) | |
| 652-1087, gnl|monDom2|scaffold_2 (56752033-56752838) | |
| 652-1087, gnl|panTro1|chr13 (52221560-52222329) | |
| 652-1087, gnl|rheMac2|chr12 (25715861-25716635) | |
| 652-1087, gnl|rn3|chr3 (44328335-44329051) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| pan (6.84285) | |
| rec (1.03842) | |
| lin (0.436808) | |
| nco (0.323468) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nje (0.16592) | |
| thg (0.126791) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (6.84285) | |
| rec (1.03842) | |
| lin (0.436808) | |
| nco (0.323468) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nje (0.16592) | |
| thg (0.126791) | |
| ecc (0.115035) | |
| eje (0.0988338) |