Non-Coding RNA Search

Ss1.1-rpan028_n6.5

Sequence:


               
               CATGTACACATGTATGGTGAGTAATTCTGTGGGAAATACCACCGCTTCAGCCACTCTGAA
TGTTACTGCAGCAACCACTACTCCCTTCTCTTACTTTTCAACCGTCACAGTAGAGACTAT
GGAACCTTCTCAGGATGAGGCTCGGACCACGGATAACAATGTGGGTCCCACTCCAGTAAT
TGACTGGGAGACCACCAACGTGACCACCTCTCTCACGCCACAGAGCACAAGGTCAACAGA
AAAAACATTCACCATCCCTGTGACTGACATAAACAGTGGCATCCCAGGAATGGATGAGGT
CATGAAGACTACCAAAATCATCATGGGCTGTTTGGTGGCCATCACACTCATGGCCGCAGT
GATGCTCGTCATTTTCTACAAGATGAGAAAGCAGCACCATCGGCAAAACCATCACGCCCC
GACAAGGACTGTTGAAATCATTAATGTGGATGATGAGATTACAGGAGACACACCCATGGA
AAGCCACCTGCCCATGCCTGCTATCGAGCATGAGCACCTAAATCACTATAACTCTTACAA
ATCTCCCTTCAACCACACAACGACAGTTAATACAATAAATTCAATACACAGTTCAGTGCA
TGAACCGTTATTGATCCGAATGAACTCGAAAGACAATGTACAAGAGACTCAAATCTAAAA
CATTTACAGTTACGAAAAACACTCAAAAAAAAAAAAAGGACAGTTTATTAAAAATGACAC
AAATGACTGGGCTAAATCTACTGTTTCAAAAAAGTGTCTTTACAAAAAAAAAACAAAAAG
AAATTTATTTATTAAAAATTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTACACATGTATGGTGAGTAATTCTGTGGGAAATACCACCGCTTCAGCCACTCTGAA
TGTTACTGCAGCAACCACTACTCCCTTCTCTTACTTTTCAACCGTCACAGTAGAGACTAT
GGAACCTTCTCAGGATGAGGCTCGGACCACGGATAACAATGTGGGTCCCACTCCAGTAAT
TGACTGGGAGACCACCAACGTGACCACCTCTCTCACGCCACAGAGCACAAGGTCAACAGA
AAAAACATTCACCATCCCTGTGACTGACATAAACAGTGGCATCCCAGGAATGGATGAGGT
CATGAAGACTACCAAAATCATCATGGGCTGTTTGGTGGCCATCACACTCATGGCCGCAGT
GATGCTCGTCATTTTCTACAAGATGAGAAAGCAGCACCATCGGCAAAACCATCACGCCCC
GACAAGGACTGTTGAAATCATTAATGTGGATGATGAGATTACAGGAGACACACCCATGGA
AAGCCACCTGCCCATGCCTGCTATCGAGCATGAGCACCTAAATCACTATAACTCTTACAA
ATCTCCCTTCAACCACACAACGACAGTTAATACAATAAATTCAATACACAGTTCAGTGCA
TGAACCGTTATTGATCCGAATGAACTCGAAAGACAATGTACAAGAGACTCAAATCTAAAA
CATTTACAGTTACGAAAAACACTCAAAAAAAAAAAAAGGACAGTTTATTAAAAATGACAC
AAATGACTGGGCTAAATCTACTGTTTCAAAAAAGTGTCTTTACAAAAAAAAAACAAAAAG
AAATTTATTTATTAAAAATTCTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               240-559, - strand, RNAz p=0.991885

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-559, - strand, RNAz p=0.991885

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               242-559, DB302005 BRAMY2 Homo sapiens cDNA clone BRAMY2017503 3', mRNA 
(dbj|DB302005.1|), blast E-value=0, identity=95.28% 
               

               
               242-559, DB316021 FCBBF3 Homo sapiens cDNA clone FCBBF3019606 3', mRNA 
(dbj|DB316021.1|), blast E-value=0, identity=95.28% 
               

               
               248-559, DB316559 FEBRA2 Homo sapiens cDNA clone FEBRA2000277 3', mRNA 
(dbj|DB316559.1|), blast E-value=0, identity=95.51% 
               

               
               242-559, UI-E-EJ1-ajq-o-21-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|CK299113.1|), blast E-value=0, identity=95.28% 
               

               
               248-559, DG2-9n19 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO594918.1|), blast E-value=0, identity=95.19% 
               

               
               240-559, 010126BEMN058432HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY156036.1|), blast E-value=0, identity=94.06%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               242-559, DB302005 BRAMY2 Homo sapiens cDNA clone BRAMY2017503 3', mRNA 
(dbj|DB302005.1|), blast E-value=0, identity=95.28% 
               

               
               242-559, DB316021 FCBBF3 Homo sapiens cDNA clone FCBBF3019606 3', mRNA 
(dbj|DB316021.1|), blast E-value=0, identity=95.28% 
               

               
               248-559, DB316559 FEBRA2 Homo sapiens cDNA clone FEBRA2000277 3', mRNA 
(dbj|DB316559.1|), blast E-value=0, identity=95.51% 
               

               
               242-559, UI-E-EJ1-ajq-o-21-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|CK299113.1|), blast E-value=0, identity=95.28% 
               

               
               248-559, DG2-9n19 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO594918.1|), blast E-value=0, identity=95.19% 
               

               
               240-559, 010126BEMN058432HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY156036.1|), blast E-value=0, identity=94.06%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-804, gnl|bosTau2|chr15 (43873988-43874795)
               

               
               1-804, gnl|Hg17|chr11 (40093153-40092346)
               

               
               1-804, gnl|Mm7|chr2 (97481012-97481825)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr15 (43873988-43874795)
               

               
               1-804, gnl|Hg17|chr11 (40093153-40092346)
               

               
               1-804, gnl|Mm7|chr2 (97481012-97481825)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               pan (0.23596)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)

	242-559, DB302005 BRAMY2 Homo sapiens cDNA clone BRAMY2017503 3', mRNA (dbj\|DB302005.1\|), blast E-value=0, identity=95.28%
	242-559, DB316021 FCBBF3 Homo sapiens cDNA clone FCBBF3019606 3', mRNA (dbj\|DB316021.1\|), blast E-value=0, identity=95.28%
	248-559, DB316559 FEBRA2 Homo sapiens cDNA clone FEBRA2000277 3', mRNA (dbj\|DB316559.1\|), blast E-value=0, identity=95.51%
	242-559, UI-E-EJ1-ajq-o-21-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone (gb\|CK299113.1\|), blast E-value=0, identity=95.28%
	248-559, DG2-9n19 DG2-brain Canis familiaris cDNA 3', mRNA sequence (gb\|CO594918.1\|), blast E-value=0, identity=95.19%
	240-559, 010126BEMN058432HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY156036.1\|), blast E-value=0, identity=94.06%

	1-804, gnl\|bosTau2\|chr15 (43873988-43874795)
	1-804, gnl\|Hg17\|chr11 (40093153-40092346)
	1-804, gnl\|Mm7\|chr2 (97481012-97481825)