Ss1.1-rpan11_f21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATACTTGCCGGGAAGACCGTTGACAACCTCAGAGCAAAATGAAGTTGTTTCTGCTGCTT TCAGCCTTTGGGTTCTGCTGGGCCCAGTATGCCCCACAAACCCAGTCTGGACGAACGTCT ATTGTCCATCTGTTTGAATGGCGCTGGGTTGACATTGCTCTTGAATGTGAGCGGTATTTG GGCCCCAAAGGATTTGGAGGGGTACAGGTCTCCCCCCCCAATGAAAATATAGTAGTCACT AACCCTTCAAGACCTTGGTGGGAGAGATACCAACCAGTGAGTTACAAGTTATGTACCAGA TCAGGAAATGAAAATGAATTCAGAGATATGGTGACTAGATGTAACAACGTTGGCGTGCGT ATTTATGTGGATGCTGTCATTAATCATATGTGTGGAAGTGGTGCAGCTGCAGGAACGGGC ACCACTTGTGGAAGTTATTGCAACCCTGGAAACAGGGAGTTTCCAGCAGTCCCATACTCT GCTTGGGATTTTAACGATGGTAAATGTAAAACTGCAAGTGGAGGAATCGAGAGCTATAAT GATCCTTATCAAGTCAGAGATTGTCAACTGGTTGGTCTTCTTGATCTTGCACTGGAAAAA GATTATGTGCGCTCCATGATTGCTGATTATCTAAACAAACTCATTGACATTGGTGTAGCA GGGTTCCGAATTGATGCTTCTAAGCACATGTGGCCTGGAGACATAAAAGCAGTTTTGGAT AAACTTCACAACCTAAACACCAACTGGTTCCCTGCCGGAAGTCGACCTTTCATATTCCAG GAGGTGATTGATTTGGGTGGTGAGGCAATTCAAAGCAGTGAGTACTTTGGAAATGGCCGC GTGACAGAATTTAAATACGGTGCAAAACTGGGCACCGTTGTGCGCAAGTGGAGTGGAGAG AAGATGTCTTACTTGAAGAACTGGGGAGAAGGCTGGGGTTTCATGCCCTCTGATAGAGCC CTTGTCTTTGTTGATAACCATGACAACCAGCGAGGGCATGGAGCAGGGGGAGCATCTATT CTTACATTCTGGGACGCTAGACTGTACAAAGTGGCAGTTGGATTTATGCTCGCCCACCCT TACGGATTCACACGAGTGATGTCAAGCTACCGTTGGGCAAGAAATTTTGTGAATGGACAA GATGTTAATGATTGGATTGGGCCACCAAATAATAACGGGGTCATTAAGGAAGTTACTATT AATGCAGATACTACCTGTGGCAATGACTGGGTCTGTGAGCATCGATGGCGTCAGATAAGG AACATGGTTTGGTTCCGTAACGTGGTGGACGGCCAACCTTTTGCAAACTGGTGGGATAAC GGAAGCAACCAGGTAGCTTTTGGAAGAGGAAACAGAGGATTCATTGTCTTTAACAATGAT GATTGGCAATTATCTTCAACTTTGCAAACTGGTCTTCCTGGTGGCACATACTGTGATGTT ATCTCTGGAGATAAAGTTGGTAACAGTTGTACAGGAATTAAAGTCTATGTTTCCAGTGAT GGCACAGCTCAGTTTTCTATTAGTAACTCTGCTGAAGATCCATTTATTGCAATTCATGCT GAATCCAAATTGTAAAATTTGAATTAAATACATCTTCCAAGAGCAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATACTTGCCGGGAAGACCGTTGACAACCTCAGAGCAAAATGAAGTTGTTTCTGCTGCTT TCAGCCTTTGGGTTCTGCTGGGCCCAGTATGCCCCACAAACCCAGTCTGGACGAACGTCT ATTGTCCATCTGTTTGAATGGCGCTGGGTTGACATTGCTCTTGAATGTGAGCGGTATTTG GGCCCCAAAGGATTTGGAGGGGTACAGGTCTCCCCCCCCAATGAAAATATAGTAGTCACT AACCCTTCAAGACCTTGGTGGGAGAGATACCAACCAGTGAGTTACAAGTTATGTACCAGA TCAGGAAATGAAAATGAATTCAGAGATATGGTGACTAGATGTAACAACGTTGGCGTGCGT ATTTATGTGGATGCTGTCATTAATCATATGTGTGGAAGTGGTGCAGCTGCAGGAACGGGC ACCACTTGTGGAAGTTATTGCAACCCTGGAAACAGGGAGTTTCCAGCAGTCCCATACTCT GCTTGGGATTTTAACGATGGTAAATGTAAAACTGCAAGTGGAGGAATCGAGAGCTATAAT GATCCTTATCAAGTCAGAGATTGTCAACTGGTTGGTCTTCTTGATCTTGCACTGGAAAAA GATTATGTGCGCTCCATGATTGCTGATTATCTAAACAAACTCATTGACATTGGTGTAGCA GGGTTCCGAATTGATGCTTCTAAGCACATGTGGCCTGGAGACATAAAAGCAGTTTTGGAT AAACTTCACAACCTAAACACCAACTGGTTCCCTGCCGGAAGTCGACCTTTCATATTCCAG GAGGTGATTGATTTGGGTGGTGAGGCAATTCAAAGCAGTGAGTACTTTGGAAATGGCCGC GTGACAGAATTTAAATACGGTGCAAAACTGGGCACCGTTGTGCGCAAGTGGAGTGGAGAG AAGATGTCTTACTTGAAGAACTGGGGAGAAGGCTGGGGTTTCATGCCCTCTGATAGAGCC CTTGTCTTTGTTGATAACCATGACAACCAGCGAGGGCATGGAGCAGGGGGAGCATCTATT CTTACATTCTGGGACGCTAGACTGTACAAAGTGGCAGTTGGATTTATGCTCGCCCACCCT TACGGATTCACACGAGTGATGTCAAGCTACCGTTGGGCAAGAAATTTTGTGAATGGACAA GATGTTAATGATTGGATTGGGCCACCAAATAATAACGGGGTCATTAAGGAAGTTACTATT AATGCAGATACTACCTGTGGCAATGACTGGGTCTGTGAGCATCGATGGCGTCAGATAAGG AACATGGTTTGGTTCCGTAACGTGGTGGACGGCCAACCTTTTGCAAACTGGTGGGATAAC GGAAGCAACCAGGTAGCTTTTGGAAGAGGAAACAGAGGATTCATTGTCTTTAACAATGAT GATTGGCAATTATCTTCAACTTTGCAAACTGGTCTTCCTGGTGGCACATACTGTGATGTT ATCTCTGGAGATAAAGTTGGTAACAGTTGTACAGGAATTAAAGTCTATGTTTCCAGTGAT GGCACAGCTCAGTTTTCTATTAGTAACTCTGCTGAAGATCCATTTATTGCAATTCATGCT GAATCCAAATTGTAAAATTTGAATTAAATACATCTTCCAAGAGCAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 76-195, + strand, RNAz p=0.798669 | |
| 76-195, - strand, RNAz p=0.798669 | |
| 76-209, + strand, RNAz p=0.990963 | |
| 76-209, - strand, RNAz p=0.990963 | |
| 632-1260, - strand, RNAz p=0.795481 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 76-195, + strand, RNAz p=0.798669 | |
| 76-195, - strand, RNAz p=0.798669 | |
| 76-209, + strand, RNAz p=0.990963 | |
| 76-209, - strand, RNAz p=0.990963 | |
| 632-1260, - strand, RNAz p=0.795481 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 1-209, gnl|bosTau2|chr3 (33881520-33881312) | |
| 1-209, gnl|canFam2|chrUn (46712618-46712774) | |
| 1-209, gnl|danRer3|chr17 (47529915-47529766) | |
| 1-209, gnl|dasNov1|scaffold_140518 (1776-1626) | |
| 1-209, gnl|echTel1|scaffold_200667 (2936-2779) | |
| 1-209, gnl|fr1|chrUn (224067888-224067715) | |
| 1-209, gnl|galGal2|chr8 (26756-26597) | |
| 1-209, gnl|hg17|chr1 (103872034-103872191) | |
| 1-209, gnl|Hg17|chr1 (104005074-104005282) | |
| 1-209, gnl|loxAfr1|scaffold_61363 (571-417) | |
| 1-209, gnl|mm7|chr3 (113142111-113141950) | |
| 1-209, gnl|Mm7|chr3 (113076883-113076671) | |
| 1-209, gnl|monDom2|scaffold_0 (14539869-14539711) | |
| 1-209, gnl|oryCun1|scaffold_96224 (1411-1254) | |
| 1-209, gnl|panTro1|chr1 (103041326-103041483) | |
| 1-209, gnl|rheMac2|chr1 (106589763-106589920) | |
| 1-209, gnl|rn3|chr2 (209481245-209481088) | |
| 1-209, gnl|tetNig1|chr15_random (2111119-2111290) | |
| 1-209, gnl|xenTro1|scaffold_466 (405993-406144) | |
| 553-785, gnl|bosTau2|chr3 (33875622-33875390) | |
| 553-785, gnl|canFam2|chrUn (46714892-46715152) | |
| 553-785, gnl|danRer3|chr17 (47524403-47524143) | |
| 553-785, gnl|echTel1|scaffold_38030 (1928-1668) | |
| 553-785, gnl|fr1|chrUn (224066973-224066710) | |
| 553-785, gnl|galGal2|chr8 (24852-24608) | |
| 553-785, gnl|hg17|chr1 (103874183-103874443) | |
| 553-785, gnl|Hg17|chr1 (104007222-104007454) | |
| 553-785, gnl|loxAfr1|scaffold_187199 (521-261) | |
| 553-785, gnl|mm7|chr3 (113139427-113139169) | |
| 553-785, gnl|Mm7|chr3 (113074198-113073966) | |
| 553-785, gnl|monDom2|scaffold_0 (14533441-14533184) | |
| 553-785, gnl|oryCun1|scaffold_170471 (590-850) | |
| 553-785, gnl|panTro1|chr1 (103043468-103043728) | |
| 553-785, gnl|rheMac2|chr1 (106591918-106592179) | |
| 553-785, gnl|rn3|chr2 (209478924-209478673) | |
| 553-785, gnl|xenTro1|scaffold_466 (407847-408144) | |
| 918-1040, gnl|bosTau2|chr3 (33873659-33873537) | |
| 918-1040, gnl|canFam2|chrUn (46716405-46716730) | |
| 918-1040, gnl|danRer3|chr17 (47519236-47518925) | |
| 918-1040, gnl|echTel1|scaffold_38029 (3739-3419) | |
| 918-1040, gnl|fr1|chrUn (224064486-224064259) | |
| 918-1040, gnl|galGal2|chr8 (23960-23618) | |
| 918-1040, gnl|hg17|chr1 (103876219-103876545) | |
| 918-1040, gnl|Hg17|chr1 (104009142-104009264) | |
| 918-1040, gnl|loxAfr1|scaffold_100313 (5219-5539) | |
| 918-1040, gnl|mm7|chr3 (113136709-113136385) | |
| 918-1040, gnl|Mm7|chr3 (113071490-113071368) | |
| 918-1040, gnl|monDom2|scaffold_0 (14531942-14531616) | |
| 918-1040, gnl|oryCun1|scaffold_53786 (2019-2333) | |
| 918-1040, gnl|panTro1|chr1 (103045427-103045753) | |
| 918-1040, gnl|rheMac2|chr1 (106593814-106594141) | |
| 918-1040, gnl|rn3|chr2 (209476286-209475962) | |
| 918-1040, gnl|tetNig1|chr15_random (2113344-2113571) | |
| 918-1040, gnl|xenTro1|scaffold_466 (410413-410851) | |
| 1141-1260, gnl|bosTau2|chr3 (33871125-33871006) | |
| 1141-1260, gnl|Hg17|chr1 (104011438-104011557) | |
| 1141-1260, gnl|Mm7|chr3 (113070012-113069893) | |
| 1391-1611, gnl|bosTau2|chr3 (33868686-33868461) | |
| 1391-1611, gnl|canFam2|chrUn (46719600-46719799) | |
| 1391-1611, gnl|danRer3|chr17 (47511583-47511399) | |
| 1391-1611, gnl|dasNov1|scaffold_86521 (8846-8651) | |
| 1391-1611, gnl|fr1|chrUn (224063644-224063466) | |
| 1391-1611, gnl|galGal2|chr8 (22607-22409) | |
| 1391-1611, gnl|hg17|chr1 (103880207-103880403) | |
| 1391-1611, gnl|Hg17|chr1 (104013117-104013341) | |
| 1391-1611, gnl|loxAfr1|scaffold_29899 (1432-1237) | |
| 1391-1611, gnl|mm7|chr3 (113132832-113132636) | |
| 1391-1611, gnl|Mm7|chr3 (113067553-113067329) | |
| 1391-1611, gnl|monDom2|scaffold_0 (14526502-14526309) | |
| 1391-1611, gnl|oryCun1|scaffold_170471 (4696-4891) | |
| 1391-1611, gnl|panTro1|chr1 (103049407-103049604) | |
| 1391-1611, gnl|rheMac2|chr1 (106597790-106597986) | |
| 1391-1611, gnl|rn3|chr2 (209470182-209469987) | |
| 1391-1611, gnl|tetNig1|chr15_random (2114141-2114321) | |
| 1391-1611, gnl|xenTro1|scaffold_466 (411881-412072) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-209, gnl|bosTau2|chr3 (33881520-33881312) | |
| 1-209, gnl|canFam2|chrUn (46712618-46712774) | |
| 1-209, gnl|danRer3|chr17 (47529915-47529766) | |
| 1-209, gnl|dasNov1|scaffold_140518 (1776-1626) | |
| 1-209, gnl|echTel1|scaffold_200667 (2936-2779) | |
| 1-209, gnl|fr1|chrUn (224067888-224067715) | |
| 1-209, gnl|galGal2|chr8 (26756-26597) | |
| 1-209, gnl|hg17|chr1 (103872034-103872191) | |
| 1-209, gnl|Hg17|chr1 (104005074-104005282) | |
| 1-209, gnl|loxAfr1|scaffold_61363 (571-417) | |
| 1-209, gnl|mm7|chr3 (113142111-113141950) | |
| 1-209, gnl|Mm7|chr3 (113076883-113076671) | |
| 1-209, gnl|monDom2|scaffold_0 (14539869-14539711) | |
| 1-209, gnl|oryCun1|scaffold_96224 (1411-1254) | |
| 1-209, gnl|panTro1|chr1 (103041326-103041483) | |
| 1-209, gnl|rheMac2|chr1 (106589763-106589920) | |
| 1-209, gnl|rn3|chr2 (209481245-209481088) | |
| 1-209, gnl|tetNig1|chr15_random (2111119-2111290) | |
| 1-209, gnl|xenTro1|scaffold_466 (405993-406144) | |
| 553-785, gnl|bosTau2|chr3 (33875622-33875390) | |
| 553-785, gnl|canFam2|chrUn (46714892-46715152) | |
| 553-785, gnl|danRer3|chr17 (47524403-47524143) | |
| 553-785, gnl|echTel1|scaffold_38030 (1928-1668) | |
| 553-785, gnl|fr1|chrUn (224066973-224066710) | |
| 553-785, gnl|galGal2|chr8 (24852-24608) | |
| 553-785, gnl|hg17|chr1 (103874183-103874443) | |
| 553-785, gnl|Hg17|chr1 (104007222-104007454) | |
| 553-785, gnl|loxAfr1|scaffold_187199 (521-261) | |
| 553-785, gnl|mm7|chr3 (113139427-113139169) | |
| 553-785, gnl|Mm7|chr3 (113074198-113073966) | |
| 553-785, gnl|monDom2|scaffold_0 (14533441-14533184) | |
| 553-785, gnl|oryCun1|scaffold_170471 (590-850) | |
| 553-785, gnl|panTro1|chr1 (103043468-103043728) | |
| 553-785, gnl|rheMac2|chr1 (106591918-106592179) | |
| 553-785, gnl|rn3|chr2 (209478924-209478673) | |
| 553-785, gnl|xenTro1|scaffold_466 (407847-408144) | |
| 918-1040, gnl|bosTau2|chr3 (33873659-33873537) | |
| 918-1040, gnl|canFam2|chrUn (46716405-46716730) | |
| 918-1040, gnl|danRer3|chr17 (47519236-47518925) | |
| 918-1040, gnl|echTel1|scaffold_38029 (3739-3419) | |
| 918-1040, gnl|fr1|chrUn (224064486-224064259) | |
| 918-1040, gnl|galGal2|chr8 (23960-23618) | |
| 918-1040, gnl|hg17|chr1 (103876219-103876545) | |
| 918-1040, gnl|Hg17|chr1 (104009142-104009264) | |
| 918-1040, gnl|loxAfr1|scaffold_100313 (5219-5539) | |
| 918-1040, gnl|mm7|chr3 (113136709-113136385) | |
| 918-1040, gnl|Mm7|chr3 (113071490-113071368) | |
| 918-1040, gnl|monDom2|scaffold_0 (14531942-14531616) | |
| 918-1040, gnl|oryCun1|scaffold_53786 (2019-2333) | |
| 918-1040, gnl|panTro1|chr1 (103045427-103045753) | |
| 918-1040, gnl|rheMac2|chr1 (106593814-106594141) | |
| 918-1040, gnl|rn3|chr2 (209476286-209475962) | |
| 918-1040, gnl|tetNig1|chr15_random (2113344-2113571) | |
| 918-1040, gnl|xenTro1|scaffold_466 (410413-410851) | |
| 1141-1260, gnl|bosTau2|chr3 (33871125-33871006) | |
| 1141-1260, gnl|Hg17|chr1 (104011438-104011557) | |
| 1141-1260, gnl|Mm7|chr3 (113070012-113069893) | |
| 1391-1611, gnl|bosTau2|chr3 (33868686-33868461) | |
| 1391-1611, gnl|canFam2|chrUn (46719600-46719799) | |
| 1391-1611, gnl|danRer3|chr17 (47511583-47511399) | |
| 1391-1611, gnl|dasNov1|scaffold_86521 (8846-8651) | |
| 1391-1611, gnl|fr1|chrUn (224063644-224063466) | |
| 1391-1611, gnl|galGal2|chr8 (22607-22409) | |
| 1391-1611, gnl|hg17|chr1 (103880207-103880403) | |
| 1391-1611, gnl|Hg17|chr1 (104013117-104013341) | |
| 1391-1611, gnl|loxAfr1|scaffold_29899 (1432-1237) | |
| 1391-1611, gnl|mm7|chr3 (113132832-113132636) | |
| 1391-1611, gnl|Mm7|chr3 (113067553-113067329) | |
| 1391-1611, gnl|monDom2|scaffold_0 (14526502-14526309) | |
| 1391-1611, gnl|oryCun1|scaffold_170471 (4696-4891) | |
| 1391-1611, gnl|panTro1|chr1 (103049407-103049604) | |
| 1391-1611, gnl|rheMac2|chr1 (106597790-106597986) | |
| 1391-1611, gnl|rn3|chr2 (209470182-209469987) | |
| 1391-1611, gnl|tetNig1|chr15_random (2114141-2114321) | |
| 1391-1611, gnl|xenTro1|scaffold_466 (411881-412072) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| pan (605.002) | |
| sag (5.11602) | |
| ova (1.16219) | |
| vin (0.997672) | |
| isp (0.75188) | |
| sug (0.509165) | |
| csk (0.422238) | |
| amn (0.417711) | |
| tbr (0.308356) | |
| col (0.195008) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| ret (0.128733) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (605.002) | |
| sag (5.11602) | |
| ova (1.16219) | |
| vin (0.997672) | |
| isp (0.75188) | |
| sug (0.509165) | |
| csk (0.422238) | |
| amn (0.417711) | |
| tbr (0.308356) | |
| col (0.195008) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| ret (0.128733) | |
| jca (0.11396) | |
| spc (0.113366) |