Non-Coding RNA Search

Ss1.1-rpan12_g5.5

Sequence:


               
               TTCAAGATACAACAATGGGACATAGGCAGACACGATTTCCTTGAATCTGCTCCTGGCTTG
GGAATGTTCGTGACAGTTACAACTTACAACGATGAGGTATTATTATCAAAGTTATATGGC
CCCCAAGGAACATTCTATTTCACTTCACACTCACCTGGCGAACACATCATTTGCTTAGAA
TCTAATTCGACAAGGCTTGTGTCATTTGGAGGGAGTAAGCTGCGGATCCACTTAGACATT
CGCGTTGGAGAACATGACCTTGATGCAGCCATTGCTCAAGCAAAGGACAAAGTTAATGAA
GTTAGCTTCAAGCTTGAACATCTAATCGAGCAAATTGAGCAAATAGTCAAAGAACAAAAC
TATCAAAGGGACCGCGAAGAAAAATTTCGAGTGACCAGTGAAGACACAAACAGCAATGTC
TTATGGTGGGCTTCTGCGCAAACGCTGGTCCTTATCTCCGTTGGAATTTTCCAAATGAAG
TACCTTAGAGACTTCTTTATAGCTAAGAAACTTGTTTAAAATGTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAGATACAACAATGGGACATAGGCAGACACGATTTCCTTGAATCTGCTCCTGGCTTG
GGAATGTTCGTGACAGTTACAACTTACAACGATGAGGTATTATTATCAAAGTTATATGGC
CCCCAAGGAACATTCTATTTCACTTCACACTCACCTGGCGAACACATCATTTGCTTAGAA
TCTAATTCGACAAGGCTTGTGTCATTTGGAGGGAGTAAGCTGCGGATCCACTTAGACATT
CGCGTTGGAGAACATGACCTTGATGCAGCCATTGCTCAAGCAAAGGACAAAGTTAATGAA
GTTAGCTTCAAGCTTGAACATCTAATCGAGCAAATTGAGCAAATAGTCAAAGAACAAAAC
TATCAAAGGGACCGCGAAGAAAAATTTCGAGTGACCAGTGAAGACACAAACAGCAATGTC
TTATGGTGGGCTTCTGCGCAAACGCTGGTCCTTATCTCCGTTGGAATTTTCCAAATGAAG
TACCTTAGAGACTTCTTTATAGCTAAGAAACTTGTTTAAAATGTTAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55622092|ref|XP_517060.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55622092|ref|XP_517060.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               222-370, - strand, RNAz p=0.731155

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-370, - strand, RNAz p=0.731155

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               222-370, gnl|bosTau2|chr6 (64822517-64822665)
               

               
               222-370, gnl|canFam2|chr3 (94283349-94283201)
               

               
               222-370, gnl|danRer3|chr14 (12109596-12109448)
               

               
               222-370, gnl|dasNov1|scaffold_83437 (8033-7885)
               

               
               222-370, gnl|echTel1|scaffold_200433 (1044-911)
               

               
               222-370, gnl|fr1|chrUn (32962552-32962678)
               

               
               222-370, gnl|hg17|chr4 (1099859-1100007)
               

               
               222-370, gnl|Hg17|chr4 (1100029-1099881)
               

               
               222-370, gnl|loxAfr1|scaffold_6885 (33872-34020)
               

               
               222-370, gnl|mm7|chr5 (32246174-32246324)
               

               
               222-370, gnl|Mm7|chr5 (107959986-107959838)
               

               
               222-370, gnl|monDom2|scaffold_10 (46731532-46731380)
               

               
               222-370, gnl|panTro1|chr3 (1184737-1184885)
               

               
               222-370, gnl|rheMac2|chr1 (2845226-2845078)
               

               
               222-370, gnl|rn3|chr14 (1486881-1486733)
               

               
               222-370, gnl|tetNig1|chrUn_random (90846511-90846380)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-370, gnl|bosTau2|chr6 (64822517-64822665)
               

               
               222-370, gnl|canFam2|chr3 (94283349-94283201)
               

               
               222-370, gnl|danRer3|chr14 (12109596-12109448)
               

               
               222-370, gnl|dasNov1|scaffold_83437 (8033-7885)
               

               
               222-370, gnl|echTel1|scaffold_200433 (1044-911)
               

               
               222-370, gnl|fr1|chrUn (32962552-32962678)
               

               
               222-370, gnl|hg17|chr4 (1099859-1100007)
               

               
               222-370, gnl|Hg17|chr4 (1100029-1099881)
               

               
               222-370, gnl|loxAfr1|scaffold_6885 (33872-34020)
               

               
               222-370, gnl|mm7|chr5 (32246174-32246324)
               

               
               222-370, gnl|Mm7|chr5 (107959986-107959838)
               

               
               222-370, gnl|monDom2|scaffold_10 (46731532-46731380)
               

               
               222-370, gnl|panTro1|chr3 (1184737-1184885)
               

               
               222-370, gnl|rheMac2|chr1 (2845226-2845078)
               

               
               222-370, gnl|rn3|chr14 (1486881-1486733)
               

               
               222-370, gnl|tetNig1|chrUn_random (90846511-90846380)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pan (1.88768)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (1.88768)

	222-370, gnl\|bosTau2\|chr6 (64822517-64822665)
	222-370, gnl\|canFam2\|chr3 (94283349-94283201)
	222-370, gnl\|danRer3\|chr14 (12109596-12109448)
	222-370, gnl\|dasNov1\|scaffold_83437 (8033-7885)
	222-370, gnl\|echTel1\|scaffold_200433 (1044-911)
	222-370, gnl\|fr1\|chrUn (32962552-32962678)
	222-370, gnl\|hg17\|chr4 (1099859-1100007)
	222-370, gnl\|Hg17\|chr4 (1100029-1099881)
	222-370, gnl\|loxAfr1\|scaffold_6885 (33872-34020)
	222-370, gnl\|mm7\|chr5 (32246174-32246324)
	222-370, gnl\|Mm7\|chr5 (107959986-107959838)
	222-370, gnl\|monDom2\|scaffold_10 (46731532-46731380)
	222-370, gnl\|panTro1\|chr3 (1184737-1184885)
	222-370, gnl\|rheMac2\|chr1 (2845226-2845078)
	222-370, gnl\|rn3\|chr14 (1486881-1486733)
	222-370, gnl\|tetNig1\|chrUn_random (90846511-90846380)