Non-Coding RNA Search

Ss1.1-rpbfe0101_f7.5

Sequence:


               
               GGCAGCCCTGGGCCGGAGGCTATGGCGGCTGCGCTGGGGGTGCGCGGGGCGACGCGGCGC
TGGTTCGCGGCGCTGCGGGGTCGGCGCCAGAGCTTCGCAGCTATGTCGGCAGGTGCCCAC
GGGTTGACAGCCGAGGAGAGGAACCAGGTTATACCTGACCTTCAAGCAGCAGGATGGTCG
GAGTTAAGGGAGAGAGATGCCATCTACAAAGAGTTCTCTTTCAAAAATTTCAATCAGGCA
TTTGGCTTTATGTCCCGAGTTGCTCTCCAAGCAGAGAAGATGAATCATCACCCGGAGTGG
TTCAATGTGTATAACAAGGTGCAGATAACTCTCACGTCGCATGACTGTGGTGGACTGACC
AAAAGAGATGTGAGGCTGGCCAAGTTTATTGACAAAGCCGCTGCTTCCGTGTGACCTCTT
CCAAAACGCATGTAAAATCTGACACACAGCTTCGCTCCAGTGGGTTTTGAAGGCAGTTTA
CGTGAACAAATGAAGTTTTAAATTTGGTTCACCTTTTGAGTTGTCGCATTTTGTAAAATC
AGTGCTTAAATAAACATGATTTCAACTCGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCCCTGGGCCGGAGGCTATGGCGGCTGCGCTGGGGGTGCGCGGGGCGACGCGGCGC
TGGTTCGCGGCGCTGCGGGGTCGGCGCCAGAGCTTCGCAGCTATGTCGGCAGGTGCCCAC
GGGTTGACAGCCGAGGAGAGGAACCAGGTTATACCTGACCTTCAAGCAGCAGGATGGTCG
GAGTTAAGGGAGAGAGATGCCATCTACAAAGAGTTCTCTTTCAAAAATTTCAATCAGGCA
TTTGGCTTTATGTCCCGAGTTGCTCTCCAAGCAGAGAAGATGAATCATCACCCGGAGTGG
TTCAATGTGTATAACAAGGTGCAGATAACTCTCACGTCGCATGACTGTGGTGGACTGACC
AAAAGAGATGTGAGGCTGGCCAAGTTTATTGACAAAGCCGCTGCTTCCGTGTGACCTCTT
CCAAAACGCATGTAAAATCTGACACACAGCTTCGCTCCAGTGGGTTTTGAAGGCAGTTTA
CGTGAACAAATGAAGTTTTAAATTTGGTTCACCTTTTGAGTTGTCGCATTTTGTAAAATC
AGTGCTTAAATAAACATGATTTCAACTCGAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20269989|gb|AAM18136.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20269989|gb|AAM18136.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               79-588, gnl|bosTau2|chr2 (45598186-45598690)
               

               
               79-588, gnl|Hg17|chr17 (3469941-3469074)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-588, gnl|bosTau2|chr2 (45598186-45598690)
               

               
               79-588, gnl|Hg17|chr17 (3469941-3469074)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fhi (0.339155)
               

               
               isp (0.300752)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               isp (0.300752)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	79-588, gnl\|bosTau2\|chr2 (45598186-45598690)
	79-588, gnl\|Hg17\|chr17 (3469941-3469074)

	fhi (0.339155)
	isp (0.300752)
	ece (0.229305)
	jej (0.197844)
	nlu (0.191681)
	nep (0.183925)
	sto (0.179824)
	sin (0.174948)
	bfe (0.149858)
	hyp (0.142837)
	ret (0.128733)
	sug (0.127291)
	eep (0.122564)
	jca (0.11396)
	eje (0.0988338)