Non-Coding RNA Search

Ss1.1-rpbfe0105_h15.5

Sequence:


               
               TGCATGAATTTCATCAGTTTCAGAGTATCTACAGGAGTTTTATTTTAAAACTTTTAGTGA
ATGCTAAAATCTGTACATTAGTATATGGCCACAGATTGGGGGGATGGAATGATTAATTCT
GTTAGCTTCTAGCCCTTTGGAACTGATTAATCCTAAATTTCCATCAAACATTTAGTATTT
GGCCATTCCCATTCCGAGTAGCAACTGGTTAACACAGATGTCACATAGAAATCTGCTGTG
TCACCTTAAATCAGCCTAACTCTTCCAGACAAGCAAATGACATGTATGGGTTTGCTTAAG
TCATTAGCTTTGCAGTTGACATTATTTAGTCCCTCTCAACTCATACTATCATGAACTATT
TGTATTTTAAATAGAAGAGAGGAGTTGTGTGTTAAGGCTCTTTATTTATACTCTATACTT
AAAATGGTTTTAATGATATCCCTTATTTCCCTTTTGAAATAAATTGTTATGAAAAGTATT
TTATAATGAAATCCATCTTGGGAAACTAGAAAGAGAAAAATGGCAAGGTAATTGTTTTGT
TTGCCATAATTCAGAATTCAAACTTAACAAGTATTTTGTAGTTTTACATTCCTTTTTAAC
CCATTCAGTGGAGAATGTCAGCTTTTCTCCCAAGATGTATGTTAAATCAATTTTAATATG
TATTCAGCATCAAAGATAAACATGTAATAAACACGGAAATAAAGTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATGAATTTCATCAGTTTCAGAGTATCTACAGGAGTTTTATTTTAAAACTTTTAGTGA
ATGCTAAAATCTGTACATTAGTATATGGCCACAGATTGGGGGGATGGAATGATTAATTCT
GTTAGCTTCTAGCCCTTTGGAACTGATTAATCCTAAATTTCCATCAAACATTTAGTATTT
GGCCATTCCCATTCCGAGTAGCAACTGGTTAACACAGATGTCACATAGAAATCTGCTGTG
TCACCTTAAATCAGCCTAACTCTTCCAGACAAGCAAATGACATGTATGGGTTTGCTTAAG
TCATTAGCTTTGCAGTTGACATTATTTAGTCCCTCTCAACTCATACTATCATGAACTATT
TGTATTTTAAATAGAAGAGAGGAGTTGTGTGTTAAGGCTCTTTATTTATACTCTATACTT
AAAATGGTTTTAATGATATCCCTTATTTCCCTTTTGAAATAAATTGTTATGAAAAGTATT
TTATAATGAAATCCATCTTGGGAAACTAGAAAGAGAAAAATGGCAAGGTAATTGTTTTGT
TTGCCATAATTCAGAATTCAAACTTAACAAGTATTTTGTAGTTTTACATTCCTTTTTAAC
CCATTCAGTGGAGAATGTCAGCTTTTCTCCCAAGATGTATGTTAAATCAATTTTAATATG
TATTCAGCATCAAAGATAAACATGTAATAAACACGGAAATAAAGTTTA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               5-708, gnl|bosTau2|chr4 (23498319-23499024)
               

               
               5-708, gnl|canFam2|chr18 (17199355-17198767)
               

               
               5-708, gnl|dasNov1|scaffold_28442 (3159-2594)
               

               
               5-708, gnl|echTel1|scaffold_290018 (88525-87986)
               

               
               5-708, gnl|galGal2|chr1 (9465644-9465079)
               

               
               5-708, gnl|hg17|chr7 (105482691-105483273)
               

               
               5-708, gnl|Hg17|chr7 (105483398-105482704)
               

               
               5-708, gnl|loxAfr1|scaffold_70088 (4401-3814)
               

               
               5-708, gnl|mm7|chr12 (30692939-30692427)
               

               
               5-708, gnl|Mm7|chr12 (30692295-30692924)
               

               
               5-708, gnl|monDom2|scaffold_30 (32653571-32654178)
               

               
               5-708, gnl|oryCun1|scaffold_178260 (176739-176170)
               

               
               5-708, gnl|panTro1|chr6 (107373640-107374218)
               

               
               5-708, gnl|rheMac2|chr3 (143660705-143661286)
               

               
               5-708, gnl|rn3|chr6 (51171398-51170886)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-708, gnl|bosTau2|chr4 (23498319-23499024)
               

               
               5-708, gnl|canFam2|chr18 (17199355-17198767)
               

               
               5-708, gnl|dasNov1|scaffold_28442 (3159-2594)
               

               
               5-708, gnl|echTel1|scaffold_290018 (88525-87986)
               

               
               5-708, gnl|galGal2|chr1 (9465644-9465079)
               

               
               5-708, gnl|hg17|chr7 (105482691-105483273)
               

               
               5-708, gnl|Hg17|chr7 (105483398-105482704)
               

               
               5-708, gnl|loxAfr1|scaffold_70088 (4401-3814)
               

               
               5-708, gnl|mm7|chr12 (30692939-30692427)
               

               
               5-708, gnl|Mm7|chr12 (30692295-30692924)
               

               
               5-708, gnl|monDom2|scaffold_30 (32653571-32654178)
               

               
               5-708, gnl|oryCun1|scaffold_178260 (176739-176170)
               

               
               5-708, gnl|panTro1|chr6 (107373640-107374218)
               

               
               5-708, gnl|rheMac2|chr3 (143660705-143661286)
               

               
               5-708, gnl|rn3|chr6 (51171398-51170886)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               bfe (0.449573)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)

	5-708, gnl\|bosTau2\|chr4 (23498319-23499024)
	5-708, gnl\|canFam2\|chr18 (17199355-17198767)
	5-708, gnl\|dasNov1\|scaffold_28442 (3159-2594)
	5-708, gnl\|echTel1\|scaffold_290018 (88525-87986)
	5-708, gnl\|galGal2\|chr1 (9465644-9465079)
	5-708, gnl\|hg17\|chr7 (105482691-105483273)
	5-708, gnl\|Hg17\|chr7 (105483398-105482704)
	5-708, gnl\|loxAfr1\|scaffold_70088 (4401-3814)
	5-708, gnl\|mm7\|chr12 (30692939-30692427)
	5-708, gnl\|Mm7\|chr12 (30692295-30692924)
	5-708, gnl\|monDom2\|scaffold_30 (32653571-32654178)
	5-708, gnl\|oryCun1\|scaffold_178260 (176739-176170)
	5-708, gnl\|panTro1\|chr6 (107373640-107374218)
	5-708, gnl\|rheMac2\|chr3 (143660705-143661286)
	5-708, gnl\|rn3\|chr6 (51171398-51170886)