Non-Coding RNA Search

Ss1.1-rpbfe0106_e7.5

Sequence:


               
               CGATGCAGAAGCCAGGTTATCAGCTGGATGTGTAGGTGAAAGAATTACTCAGATGCAAAG
ACTAACAAATATCATTACGACAGAGGACATTGTAACAGTGGTCACGATGGTGACAAATGT
TGACTTTCCTCCCAAAGAATCCAGTCTATGATGGTTGCACCATGTGTACACACTGAGAAA
CAGGACTCTCAACTGGAGCTGCTGAGCTAATGAAACTGCTTACAGTTTATTTTCTGTGTG
AAATGAGTAGGATGTCTCCTGGACATGTCAGAAAGAAGACCCTCATTTCAAAATGTGGCT
CTGGGAGACTTACGGCATTGCCTGTAGCAGAGACATGAAGGACCTGAGACTAAGAGAAAA
GTTGCAGACTCTGTAAAGAAACTTTTGAAAAAGTGTACATGAAGAATGTGGCCCTCTCCA
AATCAAGGATCTTTTGGACCTGGCTAATCAAGTGTTTGAAAAACTGACATCAGATTTCTT
AATGTCTGTCAGAAGACACTAATTCCTTAAATGAACTACTGCTATTTTTTTTTAAATCAA
AAAAACTTTTCATTTCAGATTTTAAAAAGGGTAACTTGTTTTTATTGCATTTGCTGCTGT
GTTTCTATAAATGACTATTGTAATGCCAATATGACACAGCTTGTGAATGTTTAGTGTGCT
GCTGTTCTGTGTACATAAACAAAGTCATCAAAGTGGGGTACAGTAAAGAGGCTTCCAAGC
ATTACTTTAACCTCCCTCAACAAGGTATACCTCAGTTCCACGGTTGCTAAATTATAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATGCAGAAGCCAGGTTATCAGCTGGATGTGTAGGTGAAAGAATTACTCAGATGCAAAG
ACTAACAAATATCATTACGACAGAGGACATTGTAACAGTGGTCACGATGGTGACAAATGT
TGACTTTCCTCCCAAAGAATCCAGTCTATGATGGTTGCACCATGTGTACACACTGAGAAA
CAGGACTCTCAACTGGAGCTGCTGAGCTAATGAAACTGCTTACAGTTTATTTTCTGTGTG
AAATGAGTAGGATGTCTCCTGGACATGTCAGAAAGAAGACCCTCATTTCAAAATGTGGCT
CTGGGAGACTTACGGCATTGCCTGTAGCAGAGACATGAAGGACCTGAGACTAAGAGAAAA
GTTGCAGACTCTGTAAAGAAACTTTTGAAAAAGTGTACATGAAGAATGTGGCCCTCTCCA
AATCAAGGATCTTTTGGACCTGGCTAATCAAGTGTTTGAAAAACTGACATCAGATTTCTT
AATGTCTGTCAGAAGACACTAATTCCTTAAATGAACTACTGCTATTTTTTTTTAAATCAA
AAAAACTTTTCATTTCAGATTTTAAAAAGGGTAACTTGTTTTTATTGCATTTGCTGCTGT
GTTTCTATAAATGACTATTGTAATGCCAATATGACACAGCTTGTGAATGTTTAGTGTGCT
GCTGTTCTGTGTACATAAACAAAGTCATCAAAGTGGGGTACAGTAAAGAGGCTTCCAAGC
ATTACTTTAACCTCCCTCAACAAGGTATACCTCAGTTCCACGGTTGCTAAATTATAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q90ZR4_ORYLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q90ZR4_ORYLA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.622911
               

               
               579-698, + strand, RNAz p=0.966052

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.622911
               

               
               579-698, + strand, RNAz p=0.966052

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001616, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001616, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr2 (31795130-31794352)
               

               
               1-780, gnl|Hg17|chr2 (148518425-148519196)
               

               
               1-780, gnl|Mm7|chr2 (48906949-48907715)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr2 (31795130-31794352)
               

               
               1-780, gnl|Hg17|chr2 (148518425-148519196)
               

               
               1-780, gnl|Mm7|chr2 (48906949-48907715)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

	80-199, - strand, RNAz p=0.622911
	579-698, + strand, RNAz p=0.966052

	1-780, gnl\|bosTau2\|chr2 (31795130-31794352)
	1-780, gnl\|Hg17\|chr2 (148518425-148519196)
	1-780, gnl\|Mm7\|chr2 (48906949-48907715)

	mgp (0.230681)
	gul (0.177588)
	bfe (0.149858)
	lyg (0.133103)
	ova (0.129132)