Non-Coding RNA Search

Ss1.1-rpbfe0113_d7.5

Sequence:


               
               ACCAGCCTCCTGGTGTGTGTCATAGGAGTTGTTCACATAGTGTTATGCATGATCTTCGTA
CGGTTAAGACGCCGTGGTGGTGCACCATGACATCCGACCCATATATATAAAGATAAATAT
ATATATATATGTATGTAAATTATAGCACTGAGGGCTCTGCCGCCCTGCTGGACCAAGCAA
AACTAAGCCTTTTGGTTTGGGTATTATGTTTTGTTCTGTTATTTGTTTGTTTTCGTGGCT
TGTCTTATGTCGTGACAGCACAAGTGCCAGTCCGATGGCTCTGTATTACAGAATAGTGTT
TTGAATTAATTGATGTTCTAGTTCATGTCTACCTCAGCACCTCCTCTTAGCCTAATTTTA
GGAGGTTGCCCAATTTTGTTTCTTCAATTGTACCGGTTACTTTTTGTACAAATCAATCAA
TTAATCTCTCTCTCTCTCTCTCTCCCTTTCTTTCTCCCTCCCTCCGACCCTCTCAATTCT
ATTTGTTTCATTTTCTCTTTCCCTCTCCCCCTTCCCCCCTGTGGTCCCAGCCCAGCCCTG
AGACCCCGTGTCCTGCTTGCCAGCCCTTTCTGTCCCGGCCCCAAAGCGGTTCACCCAAAT
TTGTGCGGTCCTCGTTGCAGCTTTCCGCATCTGCCTTCGTTTCGTGTAGATTGATGCGTT
TCTTTGTAATTTCAGTGTTTCTGACAAGATTTAAAAAGAAAAAGAAAAAAAAAAGAAGAA
AAAAATGAATTTACTGCTGCAGGTTTTTTTCTCTCTCCATGTGTCACTAAGTGAAGTTTG
TGCCTTCTATAGCAAAGAGAATATTTTTTACATCCTACTAACAGTAGATTTTTTTGTAGT
GAACATTTTTTGTATTTTTATTTATAAGTCTCATAAGAAAAATAGCAATGTTCAGTTGTA
TACCTTGAATCTGCAGTTAGAAGAGAATAAAGTTAATTCAGTTGTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGCCTCCTGGTGTGTGTCATAGGAGTTGTTCACATAGTGTTATGCATGATCTTCGTA
CGGTTAAGACGCCGTGGTGGTGCACCATGACATCCGACCCATATATATAAAGATAAATAT
ATATATATATGTATGTAAATTATAGCACTGAGGGCTCTGCCGCCCTGCTGGACCAAGCAA
AACTAAGCCTTTTGGTTTGGGTATTATGTTTTGTTCTGTTATTTGTTTGTTTTCGTGGCT
TGTCTTATGTCGTGACAGCACAAGTGCCAGTCCGATGGCTCTGTATTACAGAATAGTGTT
TTGAATTAATTGATGTTCTAGTTCATGTCTACCTCAGCACCTCCTCTTAGCCTAATTTTA
GGAGGTTGCCCAATTTTGTTTCTTCAATTGTACCGGTTACTTTTTGTACAAATCAATCAA
TTAATCTCTCTCTCTCTCTCTCTCCCTTTCTTTCTCCCTCCCTCCGACCCTCTCAATTCT
ATTTGTTTCATTTTCTCTTTCCCTCTCCCCCTTCCCCCCTGTGGTCCCAGCCCAGCCCTG
AGACCCCGTGTCCTGCTTGCCAGCCCTTTCTGTCCCGGCCCCAAAGCGGTTCACCCAAAT
TTGTGCGGTCCTCGTTGCAGCTTTCCGCATCTGCCTTCGTTTCGTGTAGATTGATGCGTT
TCTTTGTAATTTCAGTGTTTCTGACAAGATTTAAAAAGAAAAAGAAAAAAAAAAGAAGAA
AAAAATGAATTTACTGCTGCAGGTTTTTTTCTCTCTCCATGTGTCACTAAGTGAAGTTTG
TGCCTTCTATAGCAAAGAGAATATTTTTTACATCCTACTAACAGTAGATTTTTTTGTAGT
GAACATTTTTTGTATTTTTATTTATAAGTCTCATAAGAAAAATAGCAATGTTCAGTTGTA
TACCTTGAATCTGCAGTTAGAAGAGAATAAAGTTAATTCAGTTGTCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-228, + strand, RNAz p=0.866584
               

               
               747-864, - strand, RNAz p=0.776119

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-228, + strand, RNAz p=0.866584
               

               
               747-864, - strand, RNAz p=0.776119

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-948, gnl|bosTau2|chr15 (11886974-11885994)
               

               
               1-948, gnl|Hg17|chr11 (113630925-113631906)
               

               
               1-948, gnl|Mm7|chr9 (48624950-48623974)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-948, gnl|bosTau2|chr15 (11886974-11885994)
               

               
               1-948, gnl|Hg17|chr11 (113630925-113631906)
               

               
               1-948, gnl|Mm7|chr9 (48624950-48623974)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               gul (1.06553)
               

               
               aor (0.781097)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.06553)
               

               
               aor (0.781097)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	40-228, + strand, RNAz p=0.866584
	747-864, - strand, RNAz p=0.776119

	1-948, gnl\|bosTau2\|chr15 (11886974-11885994)
	1-948, gnl\|Hg17\|chr11 (113630925-113631906)
	1-948, gnl\|Mm7\|chr9 (48624950-48623974)

	gul (1.06553)
	aor (0.781097)
	sag (0.182715)
	sto (0.179824)
	fbs (0.175346)
	tbr (0.154178)
	isp (0.150376)
	bfe (0.149858)
	hlv (0.139256)
	ssp (0.13552)
	lyg (0.133103)
	nmm (0.132802)
	ret (0.128733)
	bla (0.124347)
	clu (0.119646)
	med (0.116252)
	spc (0.113366)