Non-Coding RNA Search

Ss1.1-rpbfe0113_f3.5

Sequence:


               
               TACTTTTTCTAAACAAGAAGGATCTCTTTGAAGAAAAAATCAAAAAAAGCCCTCTCACTA
TATGCTATCCAGAATATGCAGGCTCAAACACATATGAAGAGGCAGCTGCATATATTCAAT
GTCAGTTTGAAGACCTCAATAAAAGAAAAGACACCAAGGAAATATATACCCACTTCACAT
GTGCCACGGATACCAAGAATGTGCAGTTTGTCTTTGATGCTGTAACAGATGTCATCATAA
AAAATAATCTTAAAGATTGTGGTCTCTTCTGAGTTTTGCAGTTAATGGTAAAATGCATTT
TCAAACCAAATGAGTACTTATATATGGATCTCTCTAGACTAGAGTCTTGCACCAACACAG
AATATATGACAGATGCATCTGGGACCTGACCAAAGTTGTTGTGTTTTTGTTTTTATTTGT
TTTTAACTGAAAGTAATGTAAGGACCTTTTTTAAATGTGAGAGGTGGTCCTGCAGTGTGA
AACGAAGGGCAGTGTTAAAGCTGGGCTCTAGTATATGGATGACTTCTACGTAAGTGTAAA
TATGAAAATGTATGTATACATGTATTTATGACTTTAATTTTCCACATTACTTTTAGGTAG
TAAGAGCGGCAACTTAGAATTTTAGCGTGATGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTTTTCTAAACAAGAAGGATCTCTTTGAAGAAAAAATCAAAAAAAGCCCTCTCACTA
TATGCTATCCAGAATATGCAGGCTCAAACACATATGAAGAGGCAGCTGCATATATTCAAT
GTCAGTTTGAAGACCTCAATAAAAGAAAAGACACCAAGGAAATATATACCCACTTCACAT
GTGCCACGGATACCAAGAATGTGCAGTTTGTCTTTGATGCTGTAACAGATGTCATCATAA
AAAATAATCTTAAAGATTGTGGTCTCTTCTGAGTTTTGCAGTTAATGGTAAAATGCATTT
TCAAACCAAATGAGTACTTATATATGGATCTCTCTAGACTAGAGTCTTGCACCAACACAG
AATATATGACAGATGCATCTGGGACCTGACCAAAGTTGTTGTGTTTTTGTTTTTATTTGT
TTTTAACTGAAAGTAATGTAAGGACCTTTTTTAAATGTGAGAGGTGGTCCTGCAGTGTGA
AACGAAGGGCAGTGTTAAAGCTGGGCTCTAGTATATGGATGACTTCTACGTAAGTGTAAA
TATGAAAATGTATGTATACATGTATTTATGACTTTAATTTTCCACATTACTTTTAGGTAG
TAAGAGCGGCAACTTAGAATTTTAGCGTGATGGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8QGY6_FUGRU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8QGY6_FUGRU

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-197, - strand, RNAz p=0.966109

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.966109

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               84-217, - strand, RNAmicro p=0.998191

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               84-217, - strand, RNAmicro p=0.998191

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               79-636, gnl|bosTau2|chr24 (37085194-37084636)
               

               
               79-636, gnl|Hg17|chr7 (79491267-79491821)
               

               
               79-636, gnl|Mm7|chr5 (17280731-17280171)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-636, gnl|bosTau2|chr24 (37085194-37084636)
               

               
               79-636, gnl|Hg17|chr7 (79491267-79491821)
               

               
               79-636, gnl|Mm7|chr5 (17280731-17280171)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lin (0.291206)
               

               
               bfe (0.149858)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               bfe (0.149858)
               

               
               eru (0.120048)

	79-636, gnl\|bosTau2\|chr24 (37085194-37084636)
	79-636, gnl\|Hg17\|chr7 (79491267-79491821)
	79-636, gnl\|Mm7\|chr5 (17280731-17280171)