Non-Coding RNA Search

Ss1.1-rpbfe0113_j11.5

Sequence:


               
               CTGTGTGTGGTAGCTCCCATTGTGGTTCAACAGTAACAAACCTGACTGGTGTCCATTACG
ATGCAGGTTCAATCCCTGGGCTCACTCAGTGGGTTAAGGATCCGGCATTGCCATGAGCTT
TGGTGTAGGTCACAAACATGGCTCGAATCCCGCATTGCTGTTGCTGTGGTGTAGGCCAGC
AGCTGTCGCTCGGATTTGACCCCTCGCCTGGGAATGTCCATATGCTGTGGGTGCGGCCCT
AAAAAGCAAAACAAACAAAATCTCTCTGTGTGTGTTTTTTTTCTTTTAAATCTAAATGTG
TTTAGATAAAAAACATGGTATGATTTGACTTTGTCGGTAAGATTTTGAGGACAGTTCTTA
TTAGCAAAATATCTTAATTTCTGGTAAATCTGTAAAAAGAGGTAAGTCTCCAAATTATAA
ATGAGAGAAATGAAGCATAAGGAGAAAATTGATTAGGTTAAAATATTGAAAAGTAGTAAG
ATAAAATGAATATTTATATGGCAAAAACAGAATAACAAATTGGTATTTATAGAACATGGC
CTATTCGTCTATCTGAAATTTATAATTGTTTGTGTTAATATGACTTTGGGGAGCAAGAAT
GATTGATTATATATTCTTTCATGTTAATCTGTATTTTGAGTTTTTTTCCTTCAGTGGGTA
TGTGCGATATATAAAAGAAAGTAAAATAGGATATAAATGAAAAGTTTAAATGTTCTATAA
TTTATATCTACTGTGAAAAAAGTTGCTTACTTGCCATTAGTGAATTCCTTTGTTTTCTAG
GAAAAGAGTATATTTAGCTTTTTACCTAAAAATTTTTTAATACAATATCAAACTGTTTCA
GCAACTATTGCAGGATTTTATACATCTTATCGTTGTGTCTTTAGAAAATATGATAATGGA
AAAGAAAATCCAATTTAGGTAAAATGGAAATAACCAGTGGAAGACTGATGAACCGACTGT
GGTGTCATTGTGATCTTGAGAACTAAGTTAAAATAAAAGATTGTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGTGTGGTAGCTCCCATTGTGGTTCAACAGTAACAAACCTGACTGGTGTCCATTACG
ATGCAGGTTCAATCCCTGGGCTCACTCAGTGGGTTAAGGATCCGGCATTGCCATGAGCTT
TGGTGTAGGTCACAAACATGGCTCGAATCCCGCATTGCTGTTGCTGTGGTGTAGGCCAGC
AGCTGTCGCTCGGATTTGACCCCTCGCCTGGGAATGTCCATATGCTGTGGGTGCGGCCCT
AAAAAGCAAAACAAACAAAATCTCTCTGTGTGTGTTTTTTTTCTTTTAAATCTAAATGTG
TTTAGATAAAAAACATGGTATGATTTGACTTTGTCGGTAAGATTTTGAGGACAGTTCTTA
TTAGCAAAATATCTTAATTTCTGGTAAATCTGTAAAAAGAGGTAAGTCTCCAAATTATAA
ATGAGAGAAATGAAGCATAAGGAGAAAATTGATTAGGTTAAAATATTGAAAAGTAGTAAG
ATAAAATGAATATTTATATGGCAAAAACAGAATAACAAATTGGTATTTATAGAACATGGC
CTATTCGTCTATCTGAAATTTATAATTGTTTGTGTTAATATGACTTTGGGGAGCAAGAAT
GATTGATTATATATTCTTTCATGTTAATCTGTATTTTGAGTTTTTTTCCTTCAGTGGGTA
TGTGCGATATATAAAAGAAAGTAAAATAGGATATAAATGAAAAGTTTAAATGTTCTATAA
TTTATATCTACTGTGAAAAAAGTTGCTTACTTGCCATTAGTGAATTCCTTTGTTTTCTAG
GAAAAGAGTATATTTAGCTTTTTACCTAAAAATTTTTTAATACAATATCAAACTGTTTCA
GCAACTATTGCAGGATTTTATACATCTTATCGTTGTGTCTTTAGAAAATATGATAATGGA
AAAGAAAATCCAATTTAGGTAAAATGGAAATAACCAGTGGAAGACTGATGAACCGACTGT
GGTGTCATTGTGATCTTGAGAACTAAGTTAAAATAAAAGATTGTAAGT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               316-1007, gnl|bosTau2|chr12 (12236961-12237654)
               

               
               316-1007, gnl|Hg17|chr13 (39224264-39224947)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               316-1007, gnl|bosTau2|chr12 (12236961-12237654)
               

               
               316-1007, gnl|Hg17|chr13 (39224264-39224947)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               bfe (0.449573)
               

               
               ret (0.3862)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               ret (0.3862)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)

	316-1007, gnl\|bosTau2\|chr12 (12236961-12237654)
	316-1007, gnl\|Hg17\|chr13 (39224264-39224947)

	bfe (0.449573)
	ret (0.3862)
	fcc (0.197785)
	sag (0.182715)
	fco (0.157208)
	lyg (0.133103)