Non-Coding RNA Search

Ss1.1-rpbfe0113_p14.5

Sequence:


               
               AATTTCATTAAGATGTCCTTATAGGATGGTGATCTTATAGGGTGGACTCTTTAGTATCCC
TTCTTTAAACTGAGTGAACAAGGCTTTTGTTGCTGCAAGTTAACTTTAGGCAAAAATAGC
TGAGTTGTTCCCATATTCCCTAACCTTTGGTTTTAAGTTTTTACTTACAGTACAGATCAG
GCTATATAAAGAGAATGTTCTCAACTAGTGAATTTCATGGCACTAACTTTGGAATTTTAT
TCGTAAAGTTGAATTGAAAAGAGCAGTTGTTGCAGGTTTTAAAGCTACTCAATCTTAATC
ATGACTTCTTTCCTAATTAAATATATTTCAGGTGTTCTACTTTCTGAAGGACCAGGATTT
ATCTCTTTCAGCAACTCGTTATCAGTTTGCAAAAGAAATAGCCATGGCTTGTAGTGCTGC
ACTGTGCCCTCATCTGAAAACTCTAAAGTGTAATGGAATGAATAAAATTGGCCTCAGAGT
ATCCATTGACACTGATATGGTTGAATTTCAGGCAGGATCTGAAGGCCAGCTTCTTCCTCA
GCATTATCTAAATGATCTTGATAGTGCTCTAATCCCTGTGATCCATGGTGGGACCTCCAA
CACTACTAGTTTACCATTGGAAATAGAATTAGTGTTTTTTATTATAGAAAATCTATTTTA
GTGAAAGAATGTGAGTCATATTAGATATTGCAAATGAGTTGTTAAAACTAACTTCAAGCA
TTAAAGCTGAAATGCCACAGACACTAAGTAAATATGTTTGATGTTGAAACATGTAAGCTT
TGCTTTTTAGGCAGAAATGATCTGTTTAAATCATTAGCACAATATTTAAATCTCCAAAAA
TTTAAGAGATCCACAGTTTTTGAAGCTTTATACGTCATACAAATACTGAAAAAGACAAGG
ATTTCTTTTCTTTAAGTAGCATTTACTGTGTTATTTAAATGCCAAGCCAAAGTAACTGTA
CTTGGGTATACCTCTTTACGCCAAGAATGATTTTAATGAAGGCTCTTTTCAGATGTAACC
TTTTGAGGGAAACACCTGTTTTGTTTATATGCCAGTTGTATTACTGGTTTCTAAAGTCTG
TTAAAATTGTCTGGATCATAAAACTTATATGATGACTCTTTGAATAAGACAGATAACTTA
TTTGTCTACTTGGAGTGGAGACCTACCTCCATGATTAGATAAACTGATTATTTGCATTAA
AATCAGAATTTTGCTTTTTTTCTTTTCAAATCATTATAATGTATATATACACACACACAT
ATATATGGTTTTCTCTTTATTAAATGGGTATTCTTAATTGTGGGTGCTTCAGGATTTTGT
GCTTCTGTATTTAAGTATATTGTTTTTATAGCAAGAACATGTGATTTGGTATGTGTTTTA
TAAATCTTTAATAATTTATATATAGGTAATATTTTTGTATTGCAGTGCATTATTTTTCCT
CCTTTCCTTCCAAAGTATACCACTGTATATACCACTTCTAAGAGTGATTTGACGACAGGC
CAGATGACCCTTGAAGTAGTCATTATGTAGCAATAAATGAAGCCTGAAACAGGTTTTTGT
TTTTGCTTTTCCTTTAAATCCTAGAAGTTTCTTGGTAAGTCTGCATATTTTCATTGACAC
CAATGTATTAAATAGAAATTTTAATGAACTGCTTACTTTTGCATATTTTAAATCCTTTAT
ACAGTAGTTATTTTTTATAATATGATATTAACATAAGTTAAATTCTGTGTATTTGAAACT
GTTACAGAGCTTTCTTCTTTAAATAGCAAAATTTTTGAAAGGATGTTGTGTTAAAAAAAA
TAAAGGTCATATTTTAGTTAATCCTATCATTTAAGTTATATAAAATATAATCATTATTTT
AATGCTTTTTTTTATTCTAATGTAGAATATATGTTTTTGTATCAAAAACACTCCTGTGTC
TCGAACTATACTAAATAGCCCTGTTTTAAGAAACGTATTTATGAAGCATCTCAACTTGAA
GACTAAGTCAGGGTTATAACTCAGGATCTTAGATCTCAGGCTAGGAGAGACTGAGAATTT
GAATCAGTTTGTTCATACGGTTCCTACTGAATCACATCTGTAGTCCTAGCCAAAGACAGT
ATGGAGGAAAATATCTGTCTTTTTGAAGTAACTGCGTCATAAACAATGTACAAATGTTGC
AGATATTAAATAAAATGATAACAATAATTTGTGAAATTGTTGACATCTATAACAAAAAAT
TGCATATCAAACTCAGTTTATGTTTTCTTTATATAGTGTGTTTATTTTGCAATAAAAGTT
AATTGCACAATCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTCATTAAGATGTCCTTATAGGATGGTGATCTTATAGGGTGGACTCTTTAGTATCCC
TTCTTTAAACTGAGTGAACAAGGCTTTTGTTGCTGCAAGTTAACTTTAGGCAAAAATAGC
TGAGTTGTTCCCATATTCCCTAACCTTTGGTTTTAAGTTTTTACTTACAGTACAGATCAG
GCTATATAAAGAGAATGTTCTCAACTAGTGAATTTCATGGCACTAACTTTGGAATTTTAT
TCGTAAAGTTGAATTGAAAAGAGCAGTTGTTGCAGGTTTTAAAGCTACTCAATCTTAATC
ATGACTTCTTTCCTAATTAAATATATTTCAGGTGTTCTACTTTCTGAAGGACCAGGATTT
ATCTCTTTCAGCAACTCGTTATCAGTTTGCAAAAGAAATAGCCATGGCTTGTAGTGCTGC
ACTGTGCCCTCATCTGAAAACTCTAAAGTGTAATGGAATGAATAAAATTGGCCTCAGAGT
ATCCATTGACACTGATATGGTTGAATTTCAGGCAGGATCTGAAGGCCAGCTTCTTCCTCA
GCATTATCTAAATGATCTTGATAGTGCTCTAATCCCTGTGATCCATGGTGGGACCTCCAA
CACTACTAGTTTACCATTGGAAATAGAATTAGTGTTTTTTATTATAGAAAATCTATTTTA
GTGAAAGAATGTGAGTCATATTAGATATTGCAAATGAGTTGTTAAAACTAACTTCAAGCA
TTAAAGCTGAAATGCCACAGACACTAAGTAAATATGTTTGATGTTGAAACATGTAAGCTT
TGCTTTTTAGGCAGAAATGATCTGTTTAAATCATTAGCACAATATTTAAATCTCCAAAAA
TTTAAGAGATCCACAGTTTTTGAAGCTTTATACGTCATACAAATACTGAAAAAGACAAGG
ATTTCTTTTCTTTAAGTAGCATTTACTGTGTTATTTAAATGCCAAGCCAAAGTAACTGTA
CTTGGGTATACCTCTTTACGCCAAGAATGATTTTAATGAAGGCTCTTTTCAGATGTAACC
TTTTGAGGGAAACACCTGTTTTGTTTATATGCCAGTTGTATTACTGGTTTCTAAAGTCTG
TTAAAATTGTCTGGATCATAAAACTTATATGATGACTCTTTGAATAAGACAGATAACTTA
TTTGTCTACTTGGAGTGGAGACCTACCTCCATGATTAGATAAACTGATTATTTGCATTAA
AATCAGAATTTTGCTTTTTTTCTTTTCAAATCATTATAATGTATATATACACACACACAT
ATATATGGTTTTCTCTTTATTAAATGGGTATTCTTAATTGTGGGTGCTTCAGGATTTTGT
GCTTCTGTATTTAAGTATATTGTTTTTATAGCAAGAACATGTGATTTGGTATGTGTTTTA
TAAATCTTTAATAATTTATATATAGGTAATATTTTTGTATTGCAGTGCATTATTTTTCCT
CCTTTCCTTCCAAAGTATACCACTGTATATACCACTTCTAAGAGTGATTTGACGACAGGC
CAGATGACCCTTGAAGTAGTCATTATGTAGCAATAAATGAAGCCTGAAACAGGTTTTTGT
TTTTGCTTTTCCTTTAAATCCTAGAAGTTTCTTGGTAAGTCTGCATATTTTCATTGACAC
CAATGTATTAAATAGAAATTTTAATGAACTGCTTACTTTTGCATATTTTAAATCCTTTAT
ACAGTAGTTATTTTTTATAATATGATATTAACATAAGTTAAATTCTGTGTATTTGAAACT
GTTACAGAGCTTTCTTCTTTAAATAGCAAAATTTTTGAAAGGATGTTGTGTTAAAAAAAA
TAAAGGTCATATTTTAGTTAATCCTATCATTTAAGTTATATAAAATATAATCATTATTTT
AATGCTTTTTTTTATTCTAATGTAGAATATATGTTTTTGTATCAAAAACACTCCTGTGTC
TCGAACTATACTAAATAGCCCTGTTTTAAGAAACGTATTTATGAAGCATCTCAACTTGAA
GACTAAGTCAGGGTTATAACTCAGGATCTTAGATCTCAGGCTAGGAGAGACTGAGAATTT
GAATCAGTTTGTTCATACGGTTCCTACTGAATCACATCTGTAGTCCTAGCCAAAGACAGT
ATGGAGGAAAATATCTGTCTTTTTGAAGTAACTGCGTCATAAACAATGTACAAATGTTGC
AGATATTAAATAAAATGATAACAATAATTTGTGAAATTGTTGACATCTATAACAAAAAAT
TGCATATCAAACTCAGTTTATGTTTTCTTTATATAGTGTGTTTATTTTGCAATAAAAGTT
AATTGCACAATCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831786|ref|XP_599329.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831786|ref|XP_599329.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               538-657, - strand, RNAz p=0.51354
               

               
               1444-1563, - strand, RNAz p=0.870799

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               538-657, - strand, RNAz p=0.51354
               

               
               1444-1563, - strand, RNAz p=0.870799

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               499-2292, gnl|bosTau2|chr7 (52977105-52975282)
               

               
               499-2292, gnl|Hg17|chr5 (79808793-79810590)
               

               
               499-2292, gnl|Mm7|chr13 (89593837-89592250)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               499-2292, gnl|bosTau2|chr7 (52977105-52975282)
               

               
               499-2292, gnl|Hg17|chr5 (79808793-79810590)
               

               
               499-2292, gnl|Mm7|chr13 (89593837-89592250)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               mga (0.801025)
               

               
               sag (0.548145)
               

               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.801025)
               

               
               sag (0.548145)
               

               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

	538-657, - strand, RNAz p=0.51354
	1444-1563, - strand, RNAz p=0.870799

	499-2292, gnl\|bosTau2\|chr7 (52977105-52975282)
	499-2292, gnl\|Hg17\|chr5 (79808793-79810590)
	499-2292, gnl\|Mm7\|chr13 (89593837-89592250)

	mga (0.801025)
	sag (0.548145)
	pro (0.512033)
	fco (0.471624)
	liv (0.438853)
	fce (0.271592)
	lyg (0.266205)
	tra (0.246184)
	spc (0.226732)
	aor (0.195274)
	gul (0.177588)
	mcp (0.170648)
	eye (0.170503)
	isp (0.150376)
	bfe (0.149858)
	nca (0.136874)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)