Non-Coding RNA Search

Ss1.1-rpbfe0115_d20.5

Sequence:


               
               TCTCATAGCTAAATTGCTTAAGTACAAGTTAGAGAATTTCAGTGCAGTTATTTCTTAACG
GAAAATCTGAAACCTAAATTGCTGATTTAAAAGGTACTGTACAACCATTATATCTGTAAA
TAACTTTACTTAGCACCTTTCTGTCACTTAGAATAGTATGCAATACTACTTGAGTGAGCT
ATTTTGAAAGTAATATCAAGTTCTAGTGTTTGCTTCTTAGTATTGAACTGAAGTTACAGT
TCCGTCCTAGACACTTTGCACTAAAGTAGTCGAATCCATCCTTGTGTCTTTTTGTTAATG
TGCTCTGTATCACTGGTGAGTGCTCCTTAGTTTCCTTACCTGCTGCTACAGAAAGTTCTT
TTACATCCCAATGGCTATCGCCAAGGCTTCAAAGAAGAAAAGCTATATTTGTATGCAACA
CTAACCCTTTGACTGCTAATGTATGTTTCTGCTTGCCGTGCCTTGTTATGGCTGCTTTTT
TGTGCTAATAAAGTATGTTTGGTGTTCTCCTTGTACATCTGCTGTTTTATACATTTGCAA
CAATTTCTCTTGTAAATGGAATGGTTTGGGGTTTTTCAATAAGCATTACCTGACAACCGA
CTATAGTTAATGCAGAATTACTGAACAGTCTAATACTGACTTATTCTGAGTAAGCGAACT
CTAAATTTAATTCTATACACCTTCCCAATCATAATCACATATACTGTGGAACAGTAATGC
AAATCCATGTATAGTTTAGATGGTAACAGAAAAGGAACAGAGAAATATTAAGCCTATTGA
TTTCTCTGCTTCTAAATGAAAGATTGAAATTATCAATGATGTTATAATGTGAGTATCTAT
AACTTCCCACTGCATCAGAAACAAGTTAAATGAAGTCTTGTGAACTAATAATACATCAGC
ACTATTTATTGGTTTGGGGACCATTTTAATTAATGCCCAAAATGTAGAACTTTAACCAAA
GACTTGTCCATTTTAAAGCAAAATGGGGATCGATGGGACTTACAATTCCTGTTATTTCTA
GTAGAAGTCCCTGAAGAACATATACCAAAGTGTTTGAGAACTTTATCCAAACCTACTTTA
AAGCATTATGTGCAATTAAGTTGTTATGACATAATTACATTGCATAATTGTTGGGTCCGT
TTTTCTTGAGCTTATAATGTACCTGGAAAATAAACCTCTTGGGGAAAAAAAGGTGGTACT
GATTTTTGGAGAAAGACTATATATGCAAGCAAGATCTTGTTTTAAAGAGGTAACTTGAAA
CTCCAAGAAAGCACTTGATGTTTTATATGCTTGTAGCAAATTGATGTTTTAATTGTAGTT
TTATAGAAAGTATTAATGCTTTTATGTATTTCAGAACTTTCATATGTTAAATGGAAATTG
TTTTAAATGTGTAAATATTTGAGTTTATGTAAGCATGTATACACTGTGCTAAAAGTCACT
TATGTTTCAGTTTGTGTATAATATTAATATGCAACTTTTGTTTTAAAGTTTTTTCTTAAA
AAAATTAGTGGCTTACATTTTAAAAAAGAAAAAAATCACCAGCATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCATAGCTAAATTGCTTAAGTACAAGTTAGAGAATTTCAGTGCAGTTATTTCTTAACG
GAAAATCTGAAACCTAAATTGCTGATTTAAAAGGTACTGTACAACCATTATATCTGTAAA
TAACTTTACTTAGCACCTTTCTGTCACTTAGAATAGTATGCAATACTACTTGAGTGAGCT
ATTTTGAAAGTAATATCAAGTTCTAGTGTTTGCTTCTTAGTATTGAACTGAAGTTACAGT
TCCGTCCTAGACACTTTGCACTAAAGTAGTCGAATCCATCCTTGTGTCTTTTTGTTAATG
TGCTCTGTATCACTGGTGAGTGCTCCTTAGTTTCCTTACCTGCTGCTACAGAAAGTTCTT
TTACATCCCAATGGCTATCGCCAAGGCTTCAAAGAAGAAAAGCTATATTTGTATGCAACA
CTAACCCTTTGACTGCTAATGTATGTTTCTGCTTGCCGTGCCTTGTTATGGCTGCTTTTT
TGTGCTAATAAAGTATGTTTGGTGTTCTCCTTGTACATCTGCTGTTTTATACATTTGCAA
CAATTTCTCTTGTAAATGGAATGGTTTGGGGTTTTTCAATAAGCATTACCTGACAACCGA
CTATAGTTAATGCAGAATTACTGAACAGTCTAATACTGACTTATTCTGAGTAAGCGAACT
CTAAATTTAATTCTATACACCTTCCCAATCATAATCACATATACTGTGGAACAGTAATGC
AAATCCATGTATAGTTTAGATGGTAACAGAAAAGGAACAGAGAAATATTAAGCCTATTGA
TTTCTCTGCTTCTAAATGAAAGATTGAAATTATCAATGATGTTATAATGTGAGTATCTAT
AACTTCCCACTGCATCAGAAACAAGTTAAATGAAGTCTTGTGAACTAATAATACATCAGC
ACTATTTATTGGTTTGGGGACCATTTTAATTAATGCCCAAAATGTAGAACTTTAACCAAA
GACTTGTCCATTTTAAAGCAAAATGGGGATCGATGGGACTTACAATTCCTGTTATTTCTA
GTAGAAGTCCCTGAAGAACATATACCAAAGTGTTTGAGAACTTTATCCAAACCTACTTTA
AAGCATTATGTGCAATTAAGTTGTTATGACATAATTACATTGCATAATTGTTGGGTCCGT
TTTTCTTGAGCTTATAATGTACCTGGAAAATAAACCTCTTGGGGAAAAAAAGGTGGTACT
GATTTTTGGAGAAAGACTATATATGCAAGCAAGATCTTGTTTTAAAGAGGTAACTTGAAA
CTCCAAGAAAGCACTTGATGTTTTATATGCTTGTAGCAAATTGATGTTTTAATTGTAGTT
TTATAGAAAGTATTAATGCTTTTATGTATTTCAGAACTTTCATATGTTAAATGGAAATTG
TTTTAAATGTGTAAATATTTGAGTTTATGTAAGCATGTATACACTGTGCTAAAAGTCACT
TATGTTTCAGTTTGTGTATAATATTAATATGCAACTTTTGTTTTAAAGTTTTTTCTTAAA
AAAATTAGTGGCTTACATTTTAAAAAAGAAAAAAATCACCAGCATGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               75-194, - strand, RNAz p=0.64325
               

               
               313-432, - strand, RNAz p=0.757807

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-194, - strand, RNAz p=0.64325
               

               
               313-432, - strand, RNAz p=0.757807

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               392-495, + strand, RNAmicro p=0.975754

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               392-495, + strand, RNAmicro p=0.975754

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1548, gnl|bosTau2|chr11 (17288621-17287052)
               

               
               1-1548, gnl|Hg17|chr2 (46899893-46901450)
               

               
               1-1548, gnl|Mm7|chr17 (85438565-85440083)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1548, gnl|bosTau2|chr11 (17288621-17287052)
               

               
               1-1548, gnl|Hg17|chr2 (46899893-46901450)
               

               
               1-1548, gnl|Mm7|chr17 (85438565-85440083)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

	75-194, - strand, RNAz p=0.64325
	313-432, - strand, RNAz p=0.757807

	1-1548, gnl\|bosTau2\|chr11 (17288621-17287052)
	1-1548, gnl\|Hg17\|chr2 (46899893-46901450)
	1-1548, gnl\|Mm7\|chr17 (85438565-85440083)

	ret (0.3862)
	vin (0.332557)
	bfe (0.299715)
	cte (0.29274)
	pty (0.285429)
	fce (0.271592)
	mgp (0.230681)
	liv (0.146284)
	ova (0.129132)
	jca (0.11396)