Ss1.1-rpbfe0115_n23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGCTCCGGAGCGGCGGGTTCCGTGGGTGCTCCAGCTGCCGTCCGCCCCGCCCGAAGC GCGGGGGAGCCGAGCAGGGCCCAGAGTCCTCCTCCTCCATGAGGCCCGAGTGAGCGCGGC GGCGAGAGCCGGCCCGCGGCGCCTCCCCCCGCGTCCTCTCCAGAGCGCAGCGGCAGCGGC CCCCGGAGGAGGAGGAGGAGGAGCATGTCGGACGGTTTCGATCGGGCCCCAGAACAAACG AGGCCCCTGAGAGCTCCACCTAATTCACAGGATAACATCCCACAGCAGAATTTGGAGTCA GCAATGGCTAAACCCCAGGTGGTGGTAGCTCCTGTATTAATGTCAAAGCTGTCTGTGAAT GCCCCTGAATTTTACCCATCAAGTTATTCTTCTAATTATACAGAATCCTATGAGGATGGT TGTGAGGATTATCCCACTCTATCAGAATATGTTCAGGATTTTTTGAATCATCTTACAGAG CAGCCTGGCAGTTTTGAAACTGACATTGAACAGTTTGCAGAGACCCTAAATGGCTGGGTT ACAACAGATGATGCTTTGCAAGAACTTGTGGAACTCATCTACCAACAGGCTACATCTATC CCAAATTTCTCTTACATGGGATCTCGTCTCTGTAATTACCTGTCCCATCATCTGACAATT AGTCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGATGTCGGACTGAATATGAA GTTAAAGATCAAGCTGCTAAAGGGGATGAAGTGACTCGAAAACGATTCCATGCATTTGTA CTCTTTCTAGGAGAACTTTATCTTAACCTGGAGATCAAAGGAACAAATGGACAGGTTACA AGAGCAGACATTCTTCAGGTTGGTCTTCGGGAGTTGCTGAATGCCCTTTTTTCTAATCCT ATGGATGACAATTTAATTTGTGCGGTAAAATTACTGAAGTTGACAGGGTCAGTTTTAGAA GATGCGTGGAAGGAAAAAGGAAAAACTGATATGGAAGAGATTATTCAAAGAATTGAGAAT GTTGTCCTAGATGCAAATTGTAGCAGAGATGTAAAACAAATGCTCTTGAAGCTTGTTGAA CTCCGATCAAGTAACTGGGGTAGAGTTCATGCAACCTCAACATACAGGGAAGCGACACCT GAAAATGACCCTAATTATTTTATGAATGAACCAACATTCTATACGTCTGATGGTGTTCCT TTCACTGCAGCTGATCCAGATTACCAAGAGAAATATCAAGAGTTACTTGAAAGAGAAGAC TTTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCAGGGGCTGGTGATCCATACTTG GATGATATTGATGATGAGATGGACCCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTG GAATCAGAGCGTAAGCGAAAACAGTAAAATTAAATTTCGGCATATCAGTTTATAAAGCAG TTTAGGTTATGGTGATTTAGCAGAACAGAAAAGCAAGAAAATGTGTCACACTTATACCAA ATTAAGAATGTTGAGTTATGTTACTAATGTATGCAACTTTAATTTTGTTTAACACTCTGC CAAAATAAACTTTATTCCCTATAACTTAAAACGTGTATATATATATAATAGTTTATTATG TACAGTTAATTCCACTGTTTTGGCTGCAATAAAATCGATTTTGAAATAAATGAAATGTTG AAAGTAAATTTTGCTAGCTGGTTAGAACCTTATCCTTTAAATTCTACTTTTCTTGAGGGA AAAAATCTTAGCCTGAAAATACATATTACTGCAAAATGTAGCATCCTTTTTTAGATGTGA GTATTAGAGCTTTCATTTAGTTTTACATTTATTAGTGTTTCATTGAATTAAGTTTCAAAT ATGAATCACAGTCATGAATATCTTTAGCACTGAAGTCTTAGACTATATCATTAACAACTG ATTTACATATCGAGATGCTAGTTGATACCAAGGGCTTTTAAAATGGCATTTAAAAAACAA CTTATAACTCCTAACTAAACAACCAAGATTCTTCACTGAGGATTTATTGCAATTCTAGAA TTGTTCATTGTTTTTTTACCTAACCTCATTACCCTAAAGCCTAGAACATTATTCTTCTTC ATTTATATGACTTTCTCACTTTCATTTTATAGCATGAGTTCCACTGACTTTTTTACTGGA GAATTTTACTAGATCTTATCATTCAACTTTTCATCTGCTTTATAATTGATACATCTTAAG AATCACTTTTCTAATACTTTTACTATAATGCGGTACCACTTCAGCCCTATCTAAGTAATA TTTTTACCTAATGTCAAATTTTTTCCAACTAACTAAATGTAAAACTTAATGTAAAAAAAG GATCGCTTGTAAATATGCATGTAAATAGTTCTGTTAATAACCCACTGTTTTACATTTGGT ACATCTGTGTCTGCTAATACGATTAGCTTTCTCACTTTTCTGCTTGTTCAGTCTGAATTA AAATTAGACTTTGAAAATAAAATTTAAATAGTTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGCTCCGGAGCGGCGGGTTCCGTGGGTGCTCCAGCTGCCGTCCGCCCCGCCCGAAGC GCGGGGGAGCCGAGCAGGGCCCAGAGTCCTCCTCCTCCATGAGGCCCGAGTGAGCGCGGC GGCGAGAGCCGGCCCGCGGCGCCTCCCCCCGCGTCCTCTCCAGAGCGCAGCGGCAGCGGC CCCCGGAGGAGGAGGAGGAGGAGCATGTCGGACGGTTTCGATCGGGCCCCAGAACAAACG AGGCCCCTGAGAGCTCCACCTAATTCACAGGATAACATCCCACAGCAGAATTTGGAGTCA GCAATGGCTAAACCCCAGGTGGTGGTAGCTCCTGTATTAATGTCAAAGCTGTCTGTGAAT GCCCCTGAATTTTACCCATCAAGTTATTCTTCTAATTATACAGAATCCTATGAGGATGGT TGTGAGGATTATCCCACTCTATCAGAATATGTTCAGGATTTTTTGAATCATCTTACAGAG CAGCCTGGCAGTTTTGAAACTGACATTGAACAGTTTGCAGAGACCCTAAATGGCTGGGTT ACAACAGATGATGCTTTGCAAGAACTTGTGGAACTCATCTACCAACAGGCTACATCTATC CCAAATTTCTCTTACATGGGATCTCGTCTCTGTAATTACCTGTCCCATCATCTGACAATT AGTCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGATGTCGGACTGAATATGAA GTTAAAGATCAAGCTGCTAAAGGGGATGAAGTGACTCGAAAACGATTCCATGCATTTGTA CTCTTTCTAGGAGAACTTTATCTTAACCTGGAGATCAAAGGAACAAATGGACAGGTTACA AGAGCAGACATTCTTCAGGTTGGTCTTCGGGAGTTGCTGAATGCCCTTTTTTCTAATCCT ATGGATGACAATTTAATTTGTGCGGTAAAATTACTGAAGTTGACAGGGTCAGTTTTAGAA GATGCGTGGAAGGAAAAAGGAAAAACTGATATGGAAGAGATTATTCAAAGAATTGAGAAT GTTGTCCTAGATGCAAATTGTAGCAGAGATGTAAAACAAATGCTCTTGAAGCTTGTTGAA CTCCGATCAAGTAACTGGGGTAGAGTTCATGCAACCTCAACATACAGGGAAGCGACACCT GAAAATGACCCTAATTATTTTATGAATGAACCAACATTCTATACGTCTGATGGTGTTCCT TTCACTGCAGCTGATCCAGATTACCAAGAGAAATATCAAGAGTTACTTGAAAGAGAAGAC TTTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCAGGGGCTGGTGATCCATACTTG GATGATATTGATGATGAGATGGACCCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTG GAATCAGAGCGTAAGCGAAAACAGTAAAATTAAATTTCGGCATATCAGTTTATAAAGCAG TTTAGGTTATGGTGATTTAGCAGAACAGAAAAGCAAGAAAATGTGTCACACTTATACCAA ATTAAGAATGTTGAGTTATGTTACTAATGTATGCAACTTTAATTTTGTTTAACACTCTGC CAAAATAAACTTTATTCCCTATAACTTAAAACGTGTATATATATATAATAGTTTATTATG TACAGTTAATTCCACTGTTTTGGCTGCAATAAAATCGATTTTGAAATAAATGAAATGTTG AAAGTAAATTTTGCTAGCTGGTTAGAACCTTATCCTTTAAATTCTACTTTTCTTGAGGGA AAAAATCTTAGCCTGAAAATACATATTACTGCAAAATGTAGCATCCTTTTTTAGATGTGA GTATTAGAGCTTTCATTTAGTTTTACATTTATTAGTGTTTCATTGAATTAAGTTTCAAAT ATGAATCACAGTCATGAATATCTTTAGCACTGAAGTCTTAGACTATATCATTAACAACTG ATTTACATATCGAGATGCTAGTTGATACCAAGGGCTTTTAAAATGGCATTTAAAAAACAA CTTATAACTCCTAACTAAACAACCAAGATTCTTCACTGAGGATTTATTGCAATTCTAGAA TTGTTCATTGTTTTTTTACCTAACCTCATTACCCTAAAGCCTAGAACATTATTCTTCTTC ATTTATATGACTTTCTCACTTTCATTTTATAGCATGAGTTCCACTGACTTTTTTACTGGA GAATTTTACTAGATCTTATCATTCAACTTTTCATCTGCTTTATAATTGATACATCTTAAG AATCACTTTTCTAATACTTTTACTATAATGCGGTACCACTTCAGCCCTATCTAAGTAATA TTTTTACCTAATGTCAAATTTTTTCCAACTAACTAAATGTAAAACTTAATGTAAAAAAAG GATCGCTTGTAAATATGCATGTAAATAGTTCTGTTAATAACCCACTGTTTTACATTTGGT ACATCTGTGTCTGCTAATACGATTAGCTTTCTCACTTTTCTGCTTGTTCAGTCTGAATTA AAATTAGACTTTGAAAATAAAATTTAAATAGTTTTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-232, gnl|bosTau2|chr20 (16866494-16866727) | |
| 1-232, gnl|Hg17|chr5 (43592909-43592678) | |
| 384-589, gnl|bosTau2|chr20 (16876395-16876599) | |
| 384-589, gnl|Hg17|chr5 (43583790-43583586) | |
| 384-589, gnl|Mm7|chr13 (116647320-116647524) | |
| 700-813, gnl|bosTau2|chr20 (16881347-16881460) | |
| 700-813, gnl|canFam2|chr4 (69677805-69677685) | |
| 700-813, gnl|danRer3|chrUn (154221447-154221566) | |
| 700-813, gnl|dasNov1|scaffold_58426 (11800-11680) | |
| 700-813, gnl|echTel1|scaffold_307185 (47938-48057) | |
| 700-813, gnl|fr1|chrUn (1286533-1286652) | |
| 700-813, gnl|galGal2|chrZ (6801221-6801340) | |
| 700-813, gnl|hg17|chr5 (43574780-43574900) | |
| 700-813, gnl|Hg17|chr5 (43574896-43574783) | |
| 700-813, gnl|loxAfr1|scaffold_8036 (35439-35324) | |
| 700-813, gnl|mm7|chr13 (116655222-116655102) | |
| 700-813, gnl|Mm7|chr13 (116655104-116655217) | |
| 700-813, gnl|monDom2|scaffold_20 (27182076-27181956) | |
| 700-813, gnl|oryCun1|scaffold_197360 (9150-9270) | |
| 700-813, gnl|panTro1|chr4 (72945463-72945343) | |
| 700-813, gnl|rheMac2|chr6 (43470544-43470664) | |
| 700-813, gnl|rn3|chr2 (51553878-51553758) | |
| 700-813, gnl|tetNig1|chr12 (5863168-5863287) | |
| 700-813, gnl|xenTro1|scaffold_938 (148829-148948) | |
| 1043-1164, gnl|bosTau2|chr20 (16886294-16886415) | |
| 1043-1164, gnl|Hg17|chr5 (43570833-43570712) | |
| 1043-1164, gnl|Mm7|chr13 (116660061-116660182) | |
| 1315-2496, gnl|bosTau2|chr20 (16893450-16894614) | |
| 1315-2496, gnl|Hg17|chr5 (43563327-43562137) | |
| 1315-2496, gnl|Mm7|chr13 (116666358-116667567) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-232, gnl|bosTau2|chr20 (16866494-16866727) | |
| 1-232, gnl|Hg17|chr5 (43592909-43592678) | |
| 384-589, gnl|bosTau2|chr20 (16876395-16876599) | |
| 384-589, gnl|Hg17|chr5 (43583790-43583586) | |
| 384-589, gnl|Mm7|chr13 (116647320-116647524) | |
| 700-813, gnl|bosTau2|chr20 (16881347-16881460) | |
| 700-813, gnl|canFam2|chr4 (69677805-69677685) | |
| 700-813, gnl|danRer3|chrUn (154221447-154221566) | |
| 700-813, gnl|dasNov1|scaffold_58426 (11800-11680) | |
| 700-813, gnl|echTel1|scaffold_307185 (47938-48057) | |
| 700-813, gnl|fr1|chrUn (1286533-1286652) | |
| 700-813, gnl|galGal2|chrZ (6801221-6801340) | |
| 700-813, gnl|hg17|chr5 (43574780-43574900) | |
| 700-813, gnl|Hg17|chr5 (43574896-43574783) | |
| 700-813, gnl|loxAfr1|scaffold_8036 (35439-35324) | |
| 700-813, gnl|mm7|chr13 (116655222-116655102) | |
| 700-813, gnl|Mm7|chr13 (116655104-116655217) | |
| 700-813, gnl|monDom2|scaffold_20 (27182076-27181956) | |
| 700-813, gnl|oryCun1|scaffold_197360 (9150-9270) | |
| 700-813, gnl|panTro1|chr4 (72945463-72945343) | |
| 700-813, gnl|rheMac2|chr6 (43470544-43470664) | |
| 700-813, gnl|rn3|chr2 (51553878-51553758) | |
| 700-813, gnl|tetNig1|chr12 (5863168-5863287) | |
| 700-813, gnl|xenTro1|scaffold_938 (148829-148948) | |
| 1043-1164, gnl|bosTau2|chr20 (16886294-16886415) | |
| 1043-1164, gnl|Hg17|chr5 (43570833-43570712) | |
| 1043-1164, gnl|Mm7|chr13 (116660061-116660182) | |
| 1315-2496, gnl|bosTau2|chr20 (16893450-16894614) | |
| 1315-2496, gnl|Hg17|chr5 (43563327-43562137) | |
| 1315-2496, gnl|Mm7|chr13 (116666358-116667567) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| bfe (1.79829) | |
| isp (1.20301) | |
| ste (1.08167) | |
| tbr (1.07925) | |
| ret (0.901133) | |
| cty (0.72856) | |
| mgm (0.721371) | |
| sin (0.69979) | |
| ssp (0.677599) | |
| hea (0.613497) | |
| sme (0.610874) | |
| aor (0.585823) | |
| lyg (0.532411) | |
| kid (0.518941) | |
| ova (0.516529) | |
| fco (0.471624) | |
| tes (0.415628) | |
| ldo (0.38801) | |
| tra (0.369276) | |
| rec (0.346141) | |
| eye (0.341006) | |
| vin (0.332557) | |
| mga (0.32041) | |
| ski (0.29347) | |
| lin (0.291206) | |
| spl (0.286369) | |
| sug (0.254582) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| sag (0.182715) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| lun (0.150489) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (1.79829) | |
| isp (1.20301) | |
| ste (1.08167) | |
| tbr (1.07925) | |
| ret (0.901133) | |
| cty (0.72856) | |
| mgm (0.721371) | |
| sin (0.69979) | |
| ssp (0.677599) | |
| hea (0.613497) | |
| sme (0.610874) | |
| aor (0.585823) | |
| lyg (0.532411) | |
| kid (0.518941) | |
| ova (0.516529) | |
| fco (0.471624) | |
| tes (0.415628) | |
| ldo (0.38801) | |
| tra (0.369276) | |
| rec (0.346141) | |
| eye (0.341006) | |
| vin (0.332557) | |
| mga (0.32041) | |
| ski (0.29347) | |
| lin (0.291206) | |
| spl (0.286369) | |
| sug (0.254582) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| sag (0.182715) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| lun (0.150489) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| eje (0.0988338) |