Non-Coding RNA Search

Ss1.1-rpbfe0117_f8.5

Sequence:


               
               CACACACAGAGGATGGTGGACTTTTTTGATCTGCTGGGTTGTTTGAGGGGTTTTCCTTTG
AATGCACGCATTTTCACTTTCCCAAAAACAAAGGTACATTTTTTAAAATGTCATATATTG
CAACATATTGATGCATTTGTCATACGTTTCTACTTAAATTATTAAGCACTTACGGTTTAG
ATGTAATAATTATATGTAAGGGCAAATTTTATTTTAGATATAAAGTCAAGGAGGAGAGGG
AGATGCTTTCTGCATTTCTTGGTTACAGTTTGTGTTCTTACAAAAACAAGCAAAACACGT
AAAAAGGGCGTCCCCATTCAATTTAAGTTTCCGAGGAAGTGCATGTATCATGAAATGATT
ATGGACTTCAGTGAAGAATGTCATCGTTATGTAAATACGTATTTCCTTTTAATACAAAAT
GTAATTTTGTGCCAGTGAAACGGAGTCTGAATAGTTATGTGTTTCTTTTATCCCTGGAAA
GATTTATTAAACTTTATAGATTATCTGGGTATGTTGGATGCTTTGACAATAAATGACTAT
TTTCTTCAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACACAGAGGATGGTGGACTTTTTTGATCTGCTGGGTTGTTTGAGGGGTTTTCCTTTG
AATGCACGCATTTTCACTTTCCCAAAAACAAAGGTACATTTTTTAAAATGTCATATATTG
CAACATATTGATGCATTTGTCATACGTTTCTACTTAAATTATTAAGCACTTACGGTTTAG
ATGTAATAATTATATGTAAGGGCAAATTTTATTTTAGATATAAAGTCAAGGAGGAGAGGG
AGATGCTTTCTGCATTTCTTGGTTACAGTTTGTGTTCTTACAAAAACAAGCAAAACACGT
AAAAAGGGCGTCCCCATTCAATTTAAGTTTCCGAGGAAGTGCATGTATCATGAAATGATT
ATGGACTTCAGTGAAGAATGTCATCGTTATGTAAATACGTATTTCCTTTTAATACAAAAT
GTAATTTTGTGCCAGTGAAACGGAGTCTGAATAGTTATGTGTTTCTTTTATCCCTGGAAA
GATTTATTAAACTTTATAGATTATCTGGGTATGTTGGATGCTTTGACAATAAATGACTAT
TTTCTTCAAAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               327-443, - strand, RNAz p=0.581528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               327-443, - strand, RNAz p=0.581528

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               360-451, + strand, RNAmicro p=0.996319

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               360-451, + strand, RNAmicro p=0.996319

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr6 (53001903-53002455)
               

               
               1-552, gnl|Hg17|chr4 (81482106-81482659)
               

               
               1-552, gnl|Mm7|chr5 (97401751-97402334)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr6 (53001903-53002455)
               

               
               1-552, gnl|Hg17|chr4 (81482106-81482659)
               

               
               1-552, gnl|Mm7|chr5 (97401751-97402334)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)

	1-552, gnl\|bosTau2\|chr6 (53001903-53002455)
	1-552, gnl\|Hg17\|chr4 (81482106-81482659)
	1-552, gnl\|Mm7\|chr5 (97401751-97402334)

	fcc (0.39557)
	fce (0.271592)
	eye (0.170503)
	fco (0.157208)
	bfe (0.149858)
	bla (0.124347)