Ss1.1-rpbfe0120_m1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTAAGGCCTTAGTGTCCCCTTCCTTACCCAGGTTACTCACAAAATGGATTCCCAGCGGG AACTCGCAGAGGAACTGCGGCTTTATCAATCCACCCTGCTTCAGGATGGTCTAAAAGATC TCCTGGATGAGAAAAAATTCATCGATTGCACCCTAAAAGCAGGTGACAAAAGTCTTCCTT GCCACAGATTGATTTTGTCAGCGTGTAGTCCTTACTTTCGTGAGTATTTTTTATCTGAAA TTGATGAGGCGAAAAAGAAGGAGGTAGTTCTAGATAATGTGGATCCTGCTGTACTGGATT TAATCATTAAATACCTATACTCTGCCACTATTGATCTCAACGATGGAAATGTGCAAGATA TCTTTGCCTTGGCCAGCCGCTTTCAGATCCCCTCGGTGTTCACCGTCTGTGTTTCTTATC TTCAGAAAAGACTTGCTCCTGGTAACTGTCTAGCTATCCTAAGATTAGGACTTCTTCTCG ACTGCCCAAGACTTGCCATCTCCGCTCGTGAATTTGTGTCTGATCGCTTTGTACAGATTT GTAAGGAAGAGGACTTTATGCAGTTGTCTCCACAGGAGCTGATCTCAGTCATTTCCAATG ACAGCCTAAATGTAGAAAAGGAAGAAGCAGTCTTTGAGGCAGTGATGAAATGGGTGCGAA CAGACAAAGAAAACAGGGTTAAAAACCTTAGCGAAGTGTTTGATTGTATCCGTTTTCGCC TCATGACAGAAAAATATTTTAAAGATCATGTTGAGAAAGATGACATAATTAAAAGCAACC CAGAACTCCAGAAAAAAATCAAAGTTCTCAAAGATGCCTTCGCAGGCAAACTCCCAGAAC CCAGCAAAAACACAGAGAAGGCTGGGGCTGGTGAGGTGAATGGTGATGTTGGTGATGAAG ATTTACTTCCTGGTTACCTGAATGACATTCCCAGGCATGGAATGTTTGTCAAAGACCTCA TCCTCTTGGTTAATGACACAGCTGCGGTGGCTTACGATCCCACGGAAAATGAATGCTACC TTACTGCCCTGGCTGAGCAGATCCCTAGAAATCATTCCAGCATCGTCACCCAACAAAATC AGGTATATGTGGTCGGAGGACTATATGTGGATGAAGAAAATAAAGATCAGCCTCTACAGT CATACTTCTTCCAGCTTGATAACATAGCATCTGAGTGGGTTGGACTTCCACCTCTGCCTT CGGCCAGGTGTCTCTTCGGTCTGGGAGAGGTAGATGAGAAAATCTATGTAGTCGCAGGCA AAGACCTTCAAACAGAGGCTTCGCTGGATTCAGTATTATGCTATGATCCTGTGACGGCAA AATGGAATGAAGTTAAAAAACTTCCTATCAAAGTCTATGGCCATAGTGTGATTTCACATA AGGGAATGATATATTGTCTTGGAGGAAAGACAGATGACAAAAAGTGTACAAACAGGGTGT TTATCTACAACCCCAAAAAAGGAGATTGGAAAGATCTAGCTCCAATGAAAACCCCTCGTT CCATGTTTGGAGTAGCGGTCCATAAAGGCAAAATTGTGATTGCTGGGGGTGTCACCGAAG ATGGTCTTTCAGCTTCAGTTGAGGCTTTTGACCTTACCACCAACAAGTGGGAAGTAATGA CTGAATTTCCCCAAGAAAGAAGCTCCATCAGTCTGGTCAGCCTGGCTGGGTCCCTGTATG CCATTGGTGGTTTTGCCATGATTCAGCTGGAATCTAAAGAGTTTGCACCCACCGAAGTCA ATGACATATGGAAGTATGAAGATGATAAAAAAGAATGGGCTGGGATGCTGAAGGAAATAC GTTATGCTTCAGGAGCTAGTTGCCTAGCAACACGGTTAAATCTCTTCAAACTGTCTAAGC TGTAAACAAGAAGGTGGAAAAACATAATAGATTGGGAGGTGGTCTGTTGGGACAATAGGG CTTTAATTTACCGTTTTTTAAAAAAGCCTATACAGAGAGTCATGTAGAAATTATTCACAT TATTGTCTAAGAGATTAGCAGTGGGCTTCAAAACCTCAAAGTCATTGAATCTTCAGTGTA ATAATCAAGAGTTTAAAACCATTTTCCAATAAGAAATTAAATATTAATTTGAACAGATTA TTTCTTTTGTTAATCTCAATCAATTGTAAAGAGCTTCCTAAAATTGAGTTATGTACTAAT CCTTTCATTTACATTGCTAAGGTAACTTTACACTCGTTTTCCATTACAAATGAAATTGGA GAATGAAATATATACATCCACATTTTTTAAAAATGTTTATAATAGCAAAAACTTTTCCTC ATGCTTCAAGATATGACAAGAATCCTGTGCATTATATCAAAGATTATATGCCGTTAGAAA ATGTTGGAAATGCTATTTGAGTATAATAAGTGGGTCTCATTTGAAGGGGAAAAGCCTCTA AGTAAAAATAGTCAAATTCAAAAAGTCTTTCTTTTTTCTCCATTCTTTTTATGACACTGA TATATGTGATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTAAGGCCTTAGTGTCCCCTTCCTTACCCAGGTTACTCACAAAATGGATTCCCAGCGGG AACTCGCAGAGGAACTGCGGCTTTATCAATCCACCCTGCTTCAGGATGGTCTAAAAGATC TCCTGGATGAGAAAAAATTCATCGATTGCACCCTAAAAGCAGGTGACAAAAGTCTTCCTT GCCACAGATTGATTTTGTCAGCGTGTAGTCCTTACTTTCGTGAGTATTTTTTATCTGAAA TTGATGAGGCGAAAAAGAAGGAGGTAGTTCTAGATAATGTGGATCCTGCTGTACTGGATT TAATCATTAAATACCTATACTCTGCCACTATTGATCTCAACGATGGAAATGTGCAAGATA TCTTTGCCTTGGCCAGCCGCTTTCAGATCCCCTCGGTGTTCACCGTCTGTGTTTCTTATC TTCAGAAAAGACTTGCTCCTGGTAACTGTCTAGCTATCCTAAGATTAGGACTTCTTCTCG ACTGCCCAAGACTTGCCATCTCCGCTCGTGAATTTGTGTCTGATCGCTTTGTACAGATTT GTAAGGAAGAGGACTTTATGCAGTTGTCTCCACAGGAGCTGATCTCAGTCATTTCCAATG ACAGCCTAAATGTAGAAAAGGAAGAAGCAGTCTTTGAGGCAGTGATGAAATGGGTGCGAA CAGACAAAGAAAACAGGGTTAAAAACCTTAGCGAAGTGTTTGATTGTATCCGTTTTCGCC TCATGACAGAAAAATATTTTAAAGATCATGTTGAGAAAGATGACATAATTAAAAGCAACC CAGAACTCCAGAAAAAAATCAAAGTTCTCAAAGATGCCTTCGCAGGCAAACTCCCAGAAC CCAGCAAAAACACAGAGAAGGCTGGGGCTGGTGAGGTGAATGGTGATGTTGGTGATGAAG ATTTACTTCCTGGTTACCTGAATGACATTCCCAGGCATGGAATGTTTGTCAAAGACCTCA TCCTCTTGGTTAATGACACAGCTGCGGTGGCTTACGATCCCACGGAAAATGAATGCTACC TTACTGCCCTGGCTGAGCAGATCCCTAGAAATCATTCCAGCATCGTCACCCAACAAAATC AGGTATATGTGGTCGGAGGACTATATGTGGATGAAGAAAATAAAGATCAGCCTCTACAGT CATACTTCTTCCAGCTTGATAACATAGCATCTGAGTGGGTTGGACTTCCACCTCTGCCTT CGGCCAGGTGTCTCTTCGGTCTGGGAGAGGTAGATGAGAAAATCTATGTAGTCGCAGGCA AAGACCTTCAAACAGAGGCTTCGCTGGATTCAGTATTATGCTATGATCCTGTGACGGCAA AATGGAATGAAGTTAAAAAACTTCCTATCAAAGTCTATGGCCATAGTGTGATTTCACATA AGGGAATGATATATTGTCTTGGAGGAAAGACAGATGACAAAAAGTGTACAAACAGGGTGT TTATCTACAACCCCAAAAAAGGAGATTGGAAAGATCTAGCTCCAATGAAAACCCCTCGTT CCATGTTTGGAGTAGCGGTCCATAAAGGCAAAATTGTGATTGCTGGGGGTGTCACCGAAG ATGGTCTTTCAGCTTCAGTTGAGGCTTTTGACCTTACCACCAACAAGTGGGAAGTAATGA CTGAATTTCCCCAAGAAAGAAGCTCCATCAGTCTGGTCAGCCTGGCTGGGTCCCTGTATG CCATTGGTGGTTTTGCCATGATTCAGCTGGAATCTAAAGAGTTTGCACCCACCGAAGTCA ATGACATATGGAAGTATGAAGATGATAAAAAAGAATGGGCTGGGATGCTGAAGGAAATAC GTTATGCTTCAGGAGCTAGTTGCCTAGCAACACGGTTAAATCTCTTCAAACTGTCTAAGC TGTAAACAAGAAGGTGGAAAAACATAATAGATTGGGAGGTGGTCTGTTGGGACAATAGGG CTTTAATTTACCGTTTTTTAAAAAAGCCTATACAGAGAGTCATGTAGAAATTATTCACAT TATTGTCTAAGAGATTAGCAGTGGGCTTCAAAACCTCAAAGTCATTGAATCTTCAGTGTA ATAATCAAGAGTTTAAAACCATTTTCCAATAAGAAATTAAATATTAATTTGAACAGATTA TTTCTTTTGTTAATCTCAATCAATTGTAAAGAGCTTCCTAAAATTGAGTTATGTACTAAT CCTTTCATTTACATTGCTAAGGTAACTTTACACTCGTTTTCCATTACAAATGAAATTGGA GAATGAAATATATACATCCACATTTTTTAAAAATGTTTATAATAGCAAAAACTTTTCCTC ATGCTTCAAGATATGACAAGAATCCTGTGCATTATATCAAAGATTATATGCCGTTAGAAA ATGTTGGAAATGCTATTTGAGTATAATAAGTGGGTCTCATTTGAAGGGGAAAAGCCTCTA AGTAAAAATAGTCAAATTCAAAAAGTCTTTCTTTTTTCTCCATTCTTTTTATGACACTGA TATATGTGATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 39-198, - strand, RNAz p=0.911012 | |
| 599-878, + strand, RNAz p=0.985939 | |
| 1491-1608, + strand, RNAz p=0.625047 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-198, - strand, RNAz p=0.911012 | |
| 599-878, + strand, RNAz p=0.985939 | |
| 1491-1608, + strand, RNAz p=0.625047 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-1154, gnl|bosTau2|chr2 (20324225-20323072) | |
| 1-1154, gnl|Hg17|chr2 (170191751-170192905) | |
| 1-1154, gnl|Mm7|chr2 (69600701-69601855) | |
| 59-654, gnl|bosTau2|chr22 (14285848-14285259) | |
| 59-654, gnl|Hg17|chr3 (42702129-42702718) | |
| 59-654, gnl|Mm7|chr9 (121479841-121480430) | |
| 1417-1608, gnl|bosTau2|chr2 (20316291-20316100) | |
| 1417-1608, gnl|canFam2|chr36 (17260153-17260365) | |
| 1417-1608, gnl|danRer3|chrUn (114240076-114239863) | |
| 1417-1608, gnl|dasNov1|scaffold_9616 (9997-9790) | |
| 1417-1608, gnl|echTel1|scaffold_323457 (57122-56910) | |
| 1417-1608, gnl|fr1|chrUn (7128601-7128797) | |
| 1417-1608, gnl|galGal2|chr7 (19452093-19451886) | |
| 1417-1608, gnl|hg17|chr2 (170200192-170200399) | |
| 1417-1608, gnl|Hg17|chr2 (170200203-170200394) | |
| 1417-1608, gnl|loxAfr1|scaffold_8278 (65342-65552) | |
| 1417-1608, gnl|mm7|chr2 (69608609-69608821) | |
| 1417-1608, gnl|Mm7|chr2 (69608625-69608816) | |
| 1417-1608, gnl|monDom2|scaffold_2 (67740784-67740991) | |
| 1417-1608, gnl|oryCun1|scaffold_174964 (3797-3586) | |
| 1417-1608, gnl|panTro1|chr13 (59654665-59654872) | |
| 1417-1608, gnl|rheMac2|chr12 (33133693-33133900) | |
| 1417-1608, gnl|rn3|chr3 (51719634-51719846) | |
| 1417-1608, gnl|tetNig1|chr2 (11603161-11602948) | |
| 1417-1608, gnl|xenTro1|scaffold_65 (2698330-2698125) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1154, gnl|bosTau2|chr2 (20324225-20323072) | |
| 1-1154, gnl|Hg17|chr2 (170191751-170192905) | |
| 1-1154, gnl|Mm7|chr2 (69600701-69601855) | |
| 59-654, gnl|bosTau2|chr22 (14285848-14285259) | |
| 59-654, gnl|Hg17|chr3 (42702129-42702718) | |
| 59-654, gnl|Mm7|chr9 (121479841-121480430) | |
| 1417-1608, gnl|bosTau2|chr2 (20316291-20316100) | |
| 1417-1608, gnl|canFam2|chr36 (17260153-17260365) | |
| 1417-1608, gnl|danRer3|chrUn (114240076-114239863) | |
| 1417-1608, gnl|dasNov1|scaffold_9616 (9997-9790) | |
| 1417-1608, gnl|echTel1|scaffold_323457 (57122-56910) | |
| 1417-1608, gnl|fr1|chrUn (7128601-7128797) | |
| 1417-1608, gnl|galGal2|chr7 (19452093-19451886) | |
| 1417-1608, gnl|hg17|chr2 (170200192-170200399) | |
| 1417-1608, gnl|Hg17|chr2 (170200203-170200394) | |
| 1417-1608, gnl|loxAfr1|scaffold_8278 (65342-65552) | |
| 1417-1608, gnl|mm7|chr2 (69608609-69608821) | |
| 1417-1608, gnl|Mm7|chr2 (69608625-69608816) | |
| 1417-1608, gnl|monDom2|scaffold_2 (67740784-67740991) | |
| 1417-1608, gnl|oryCun1|scaffold_174964 (3797-3586) | |
| 1417-1608, gnl|panTro1|chr13 (59654665-59654872) | |
| 1417-1608, gnl|rheMac2|chr12 (33133693-33133900) | |
| 1417-1608, gnl|rn3|chr3 (51719634-51719846) | |
| 1417-1608, gnl|tetNig1|chr2 (11603161-11602948) | |
| 1417-1608, gnl|xenTro1|scaffold_65 (2698330-2698125) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| tbr (14.3386) | |
| bfe (11.9886) | |
| isp (7.36842) | |
| vin (6.31859) | |
| ste (6.21958) | |
| sme (6.10874) | |
| ldo (5.62615) | |
| ssp (2.98143) | |
| mas (2.10305) | |
| nms (1.28315) | |
| ese (0.759013) | |
| ton (0.526501) | |
| ret (0.514933) | |
| eru (0.480192) | |
| hlv (0.417769) | |
| nep (0.36785) | |
| nca (0.273748) | |
| mgp (0.230681) | |
| rec (0.17307) | |
| cki (0.165235) | |
| ctl (0.153069) | |
| jca (0.11396) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (14.3386) | |
| bfe (11.9886) | |
| isp (7.36842) | |
| vin (6.31859) | |
| ste (6.21958) | |
| sme (6.10874) | |
| ldo (5.62615) | |
| ssp (2.98143) | |
| mas (2.10305) | |
| nms (1.28315) | |
| ese (0.759013) | |
| ton (0.526501) | |
| ret (0.514933) | |
| eru (0.480192) | |
| hlv (0.417769) | |
| nep (0.36785) | |
| nca (0.273748) | |
| mgp (0.230681) | |
| rec (0.17307) | |
| cki (0.165235) | |
| ctl (0.153069) | |
| jca (0.11396) |